View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9894_low_2 (Length: 624)
Name: NF9894_low_2
Description: NF9894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9894_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 327
Target Start/End: Complemental strand, 7921784 - 7921473
Alignment:
| Q |
13 |
agtttcgtgttcagtgtttgtgtgtcatgtttcattgtatggaagttgattacaaacaaaaaaggttgtttattgaagggaaggataccaattattggtg |
112 |
Q |
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| T |
7921784 |
agtttcgtgttcagtgtttgtgtgtcatgtttcattgtatggaagttgattacaaacaaaaaaggttgtttattgaaggaaaggataccaattattggtg |
7921685 |
T |
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| Q |
113 |
aatgatcttgctctttctgtggccagcttgtctgccatggaattgctgatgggttcataccagtcaaaatgcaagacaatgccaattttaccaccttgct |
212 |
Q |
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| T |
7921684 |
aatgatcttgctctttctgtggccagcttgtctgccatggaattgctgatgggttcataccagtcaaaatgcaagacaatgccaattttaccaccttgct |
7921585 |
T |
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| Q |
213 |
cggcctgaatatttcagtcaccacaatttgaattagtatttctgattgtttccacttccatttttaagcaagatatctttatccttattatcaaggacaa |
312 |
Q |
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| T |
7921584 |
cggcctgaatatttcattcaccacaatttgaattagtatttctgattgtttccacttccatttttaagcaagatgtctttatcc---ttatcaaggacaa |
7921488 |
T |
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| Q |
313 |
ttgtgaagaaccttg |
327 |
Q |
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| T |
7921487 |
ttgtgaagaaccttg |
7921473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 345 - 604
Target Start/End: Complemental strand, 7921441 - 7921182
Alignment:
| Q |
345 |
ctaacacactttccaaaagtcactctcttattgaatgaattttatgtggatcccatcatattgcaaatgtcatatacacagtgttgcgtgactcatgact |
444 |
Q |
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| T |
7921441 |
ctaacacactttccaaaagtcactctcttattgaatgaattttatgtggatcccatcatattgcaaatgtcatatacatagtgttgtgtgactcatgact |
7921342 |
T |
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| Q |
445 |
ttcatcaaataagagtggatattgaaaagagtgttgatgtttttagcactactcnnnnnnnaatgtatagaatgttatgttataaactaaaagactacct |
544 |
Q |
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| T |
7921341 |
ttcatcaaataagagtggatattgaaaagagtgttaatgtttttagcactactctttttttaatgtatagaatgttatgttataaactaaaagactacct |
7921242 |
T |
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| Q |
545 |
ggtatttagttctataaatatatgctgcagctgcatgagataggattatattgtgaaccg |
604 |
Q |
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| T |
7921241 |
ggtatttagttctataaatatatgctgcagctgcatgagataggattatattgtgaaccg |
7921182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 521 - 599
Target Start/End: Complemental strand, 46726662 - 46726585
Alignment:
| Q |
521 |
atgttataaactaaaagactacctggtatttagttctataaatatatgctgcagctgcatgagataggattatattgtg |
599 |
Q |
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|||| |||||||||| || |||||||||||||||| ||||||||||| |||||||| |||| |||||||||| |||||| |
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| T |
46726662 |
atgtaataaactaaa-gagtacctggtatttagttttataaatatatactgcagctacatgtgataggattacattgtg |
46726585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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