View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9894_low_21 (Length: 239)
Name: NF9894_low_21
Description: NF9894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9894_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 31855882 - 31856110
Alignment:
| Q |
1 |
tgtacttaccctttacttagtaccgctcttctcggtatttttgctatgatcctgacttcctacctttcttgtcttggtagtcggattttgaagttggtca |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31855882 |
tgtacttaccctttacttagtaccgctctcctcggtatttttgctatgatcctgacttcctacctttcttgtcttggtagtcggattttgaagttggtca |
31855981 |
T |
|
| Q |
101 |
tcaacaaaggtttgcgaaaaagggtttacacattgttattccctgttttgtgtttccttccattacaagttctttttcttggtttatctgttctatctag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31855982 |
tcaacaaaggtttgcgaaaaagggtttacacattgttattccctgttttgtgtttccttccattacaagttctttttcttggtttatctgttctatctag |
31856081 |
T |
|
| Q |
201 |
acctgatcattttatgtttgaagcctttg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
31856082 |
acctgatcattttatgtttgaagcctttg |
31856110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 31865775 - 31866003
Alignment:
| Q |
1 |
tgtacttaccctttacttagtaccgctcttctcggtatttttgctatgatcctgacttcctacctttcttgtcttggtagtcggattttgaagttggtca |
100 |
Q |
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|||||||||||||| |||||||| || || || || ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
31865775 |
tgtacttaccctttgcttagtacggccctccttggcctttttgccatgatcctgacttcctacctttcttggcttggtagtcggattttgaagttagtca |
31865874 |
T |
|
| Q |
101 |
tcaacaaaggtttgcgaaaaagggtttacacattgttattccctgttttgtgtttccttccattacaagttctttttcttggtttatctgttctatctag |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |
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| T |
31865875 |
tcaacaaaggtttgcgaaaaagggtttacacattgctattccctgttttgtgtttccttccgttacgagttctttttcttggtttatctgttttatctag |
31865974 |
T |
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| Q |
201 |
acctgatcattttatgtttgaagcctttg |
229 |
Q |
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|||||| |||||||||||||||||||||| |
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| T |
31865975 |
acctgagcattttatgtttgaagcctttg |
31866003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 108511 - 108739
Alignment:
| Q |
1 |
tgtacttaccctttacttagtaccgctcttctcggtatttttgctatgatcctgacttcctacctttcttgtcttggtagtcggattttgaagttggtca |
100 |
Q |
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|
||||||||||||||||||||||| | |||||| || ||||||| || ||||||||||||||||||| ||| |||||||||||||||||||| || |||| |
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| T |
108511 |
tgtacttaccctttacttagtactgttcttcttggcctttttgccattatcctgacttcctaccttttttggcttggtagtcggattttgaaattagtca |
108610 |
T |
|
| Q |
101 |
tcaacaaaggtttgcgaaaaagggtttacacattgttattccctgttttgtgtttccttccattacaagttctttttcttggtttatctgttctatctag |
200 |
Q |
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||||||||||||| | |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | |
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| T |
108611 |
tcaacaaaggtttacagaaaagggtttacacattgctattctctgttttgtgtttccttccattaagggttctttttcttggtttatctgttttatctgg |
108710 |
T |
|
| Q |
201 |
acctgatcattttatgtttgaagcctttg |
229 |
Q |
| |
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|||||| |||||||||||||||||||||| |
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|
| T |
108711 |
acctgagcattttatgtttgaagcctttg |
108739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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