View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9894_low_24 (Length: 221)
Name: NF9894_low_24
Description: NF9894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9894_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 190227 - 190414
Alignment:
| Q |
14 |
agagacatataggaaacaacatttttgttattttgataaacattaccataattagatatttaacatcagatcaactttttgtggtcttaggtaattaagt |
113 |
Q |
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| T |
190227 |
agagacatataggaaataacatttttgttattttgataaacattaccataattagatatttaacatcagatcaactttttgtggtcttaggtaattaagt |
190326 |
T |
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| Q |
114 |
caagtatgatgataaatttaactaaccttgttatgcaatctcatgacacgttgatctaatattctagctacatgcacacattatatatacc |
204 |
Q |
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| T |
190327 |
caagtatgatggtaaatttaactaaccttgttatgcaatctcatgacacgttgatctaa---tctagctacatgcacacattatatatacc |
190414 |
T |
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