View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9894_low_4 (Length: 535)
Name: NF9894_low_4
Description: NF9894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9894_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 272 - 528
Target Start/End: Complemental strand, 23469999 - 23469743
Alignment:
| Q |
272 |
caacactttcccttcaaaagtgtctgactaatactatttcaccaattttcactggaaaattcttcgtgatgtcctgttgatgttccctactattagcttg |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23469999 |
caacactttcccttcaaaagtgtctgactaatactatttcaccaattttcactggaacattcttcgtgatgtcctgttgatgttccctactattagcttg |
23469900 |
T |
|
| Q |
372 |
cttgtgctgcaactattcctgatgaagactgtgaagattctttgatttggaaaagaacctctaatggaaatttagcttttaaaagatacttattctttta |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23469899 |
cttgtgctgcaactattcctgatgaagactgtgaagattctttgatttggaaaagaacctctgatggaaatttagcttttaaaagatacttattctttta |
23469800 |
T |
|
| Q |
472 |
aaaaacacactgctcctaatttggagcaaagatattcctccctcaaagtctctgctt |
528 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23469799 |
aaaaacacattgctcctactttggagcaaagatattcctccctcaaagtctctgctt |
23469743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 23470252 - 23470062
Alignment:
| Q |
19 |
caacattggtgttgaagtagtgaaattccttggttagaatgagcagcttcaagtacatgaaagtatttatatcttgtgtcaattactactgcttaatagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23470252 |
caacattggtgttgaagtagtgaaattccttggttagaatgagcagcttcaagtacatgaaagtatttatatcttgtgtcaattactactgcttaatagt |
23470153 |
T |
|
| Q |
119 |
gacaattatttctccgtttatatcttgtgtcatagattgtttatcaatgaaaaataataatccaattttttatgaatatttgtcttgtgta |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23470152 |
gacaattatttctccgtttatatcttgtgtcatagattgtttatcaatgaaaaataataatccaattttttatgaatatttgtcttgtgta |
23470062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 349 - 528
Target Start/End: Complemental strand, 23402321 - 23402144
Alignment:
| Q |
349 |
tgatgttccctactattagcttgcttgtgctgcaa----ctattcctgatgaagac-------tgtgaagattctttgatttggaaaagaacctctaatg |
437 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||| |||||||||||||||||||| | |
|
|
| T |
23402321 |
tgatgttccctactattagcttgcttatgctgcaaattactattcctgctgaagaccgaagaatgtaaagattctttgatttggaaa------------g |
23402234 |
T |
|
| Q |
438 |
gaaatttagcttttaaaagatacttattcttttaaaaaacacactgctcctaatttggagcaaagatattcctccctcaaagtctctgctt |
528 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||| || |||||| |||||||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
23402233 |
gcaatttagcttc-aaaagatacttattcttttaaaaaacgcaatgctccgaatttggagcaaagatatccctctctcaaagtctttgctt |
23402144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 23402562 - 23402489
Alignment:
| Q |
27 |
gtgttgaagtagtgaaattccttggttagaatgagcagcttcaagtacatgaaagtatttatatcttgtgtcaa |
100 |
Q |
| |
|
||||||| |||||||||||||||| || ||||||| ||||||||||||| | |||||||| |||||| |||||| |
|
|
| T |
23402562 |
gtgttgacgtagtgaaattccttgcttggaatgagaagcttcaagtacaaggaagtatttctatcttttgtcaa |
23402489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University