View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9894_low_5 (Length: 471)
Name: NF9894_low_5
Description: NF9894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9894_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 39352218 - 39351765
Alignment:
| Q |
1 |
ttaaatatatattttctgaaataaattgacgcacacaaaataggatcccttcacattctcaagctcgattataagtccacgtacaaaatgagagatattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39352218 |
ttaaatatatattttctgaaataaattgacgcacacaaaataggatcccttcacattctcaagctcgattataagtccacgtacaaaatgagagatattt |
39352119 |
T |
|
| Q |
101 |
attatccacgtacttacttcctagatacatttaaccaaaagggcaaaacaagaaagattaagtacctgaagtatgtactgaagttcatactctctgagtt |
200 |
Q |
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| T |
39352118 |
attatccacgtacttacttcctagatacatttaaccaaaagggcaaaacaagaaagattaagtacctgaagtatgtactgaagttcatactctctgagtt |
39352019 |
T |
|
| Q |
201 |
ttgcacaagctccaaaatatctgcagaacagcatacattggcaattgttgttattaaagaagaaaagttttaaataagcattttaaataaactattctga |
300 |
Q |
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| T |
39352018 |
ttgcacaagctccaaaatatctgcagaacagcatacattggcaattgttgttattaaagaagaaaagttttaaataagcattttaaataaactattctga |
39351919 |
T |
|
| Q |
301 |
taaataaagtcaggcagccgcactctttcgtcttctcagataggccaacaactgataattctttgatccaatgtggcaatagtgttttgggagccacaac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39351918 |
taaataaagtcaggcagccgcactctttcgtcttctcagataggccaacaactgataattctttgatccaatgtggcaatagtgttttgggggccacaac |
39351819 |
T |
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| Q |
401 |
caatacccttcttattaaacgggaatgaaacagtccagcaagaaagccacaaat |
454 |
Q |
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| T |
39351818 |
caatacccttctaattaaacgggaatgaaacagtccagcaagaaagccacaaat |
39351765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 277 - 454
Target Start/End: Complemental strand, 39366467 - 39366291
Alignment:
| Q |
277 |
agcattttaaataaactattctgataaataaagtcaggcagccgcactctttcgtcttctcagataggccaacaactgataattctttgatccaatgtgg |
376 |
Q |
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|||||||||||||||| || |||| |||||| ||||| |||| |||| ||| || | |||||||| ||||||| |||||| |||||||||||||| || |
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| T |
39366467 |
agcattttaaataaacaatg-tgatgaataaaatcaggtagccccactgtttagtgatatcagatagaccaacaagtgataactctttgatccaatgcgg |
39366369 |
T |
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| Q |
377 |
caatagtgttttgggagccacaaccaatacccttcttattaaacgggaatgaaacagtccagcaagaaagccacaaat |
454 |
Q |
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|||||||||||| || |||||| ||| |||||||| |||||| | |||| |||||||||||| ||||||| |||||| |
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| T |
39366368 |
caatagtgtttttgggaccacaatcaacacccttctaattaaatgtgaatcaaacagtccagctagaaagcaacaaat |
39366291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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