View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9894_low_7 (Length: 448)

Name: NF9894_low_7
Description: NF9894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9894_low_7
NF9894_low_7
[»] chr4 (9 HSPs)
chr4 (18-273)||(18422885-18423141)
chr4 (349-428)||(1866924-1867003)
chr4 (270-424)||(18423196-18423344)
chr4 (312-415)||(45064921-45065023)
chr4 (292-420)||(21544200-21544328)
chr4 (338-395)||(47239733-47239790)
chr4 (350-420)||(11172647-11172717)
chr4 (360-420)||(15733864-15733924)
chr4 (327-419)||(41915312-41915404)
[»] scaffold0015 (1 HSPs)
scaffold0015 (297-420)||(56241-56364)
[»] chr5 (5 HSPs)
chr5 (291-420)||(23045336-23045465)
chr5 (291-395)||(12235820-12235924)
chr5 (338-420)||(20633843-20633925)
chr5 (338-420)||(20649957-20650039)
chr5 (327-428)||(12712841-12712942)
[»] chr1 (4 HSPs)
chr1 (350-428)||(10450397-10450475)
chr1 (338-385)||(49742278-49742325)
chr1 (351-430)||(16237638-16237717)
chr1 (350-430)||(17516096-17516176)
[»] chr7 (7 HSPs)
chr7 (338-395)||(45379818-45379875)
chr7 (277-428)||(43217894-43218039)
chr7 (290-395)||(7779648-7779753)
chr7 (354-395)||(18125575-18125616)
chr7 (291-395)||(45886112-45886216)
chr7 (278-385)||(27062755-27062862)
chr7 (367-431)||(30839467-30839531)
[»] chr6 (2 HSPs)
chr6 (291-396)||(9458335-9458440)
chr6 (350-428)||(32052752-32052830)
[»] chr2 (7 HSPs)
chr2 (294-395)||(3546781-3546882)
chr2 (312-418)||(18485298-18485403)
chr2 (291-385)||(10920300-10920394)
chr2 (350-420)||(44057550-44057620)
chr2 (327-420)||(26755407-26755500)
chr2 (338-395)||(45256508-45256565)
chr2 (278-325)||(10212063-10212111)
[»] chr8 (3 HSPs)
chr8 (327-420)||(15068930-15069023)
chr8 (291-420)||(15174195-15174324)
chr8 (295-428)||(34776103-34776236)
[»] scaffold1630 (1 HSPs)
scaffold1630 (338-390)||(1307-1359)
[»] chr3 (1 HSPs)
chr3 (367-420)||(40796482-40796535)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 18422885 - 18423141
Alignment:
Q  18 ataaagcacgtgttttttcatattaaagcacgtgttatataaccaactttattagtttacccagcacaagtgtgttcatttcactttataaaaagcattc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  18422885 ataaagcacgtgttttttcatattaaagcacgtgttatataactaactttattagtttacgcagcacaagtgcgttcatttcactttataaaaagcattc 18422984  T
Q  118 aaatt-atatatgtgtaaactttttcccttttggatttagcctcgtttgcaatttctgaaaagtgtatgtagtatgattttgaactaaagtaatgatatt 216  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  18422985 aaatttatatatgtgtaaactttttcccttttggatttagcctcgtttgcaatttatgaaaagtgtatgtagtatgattatgaactaaagtaatgatatt 18423084  T
Q  217 ctttctgtcttaataaacttgctttgattaaaagtaaaggtgattcttttcaaatat 273  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18423085 ctttccgtcttaataaacttgctttgattaaaattaaaggtgattcttttcaaatat 18423141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 428
Target Start/End: Complemental strand, 1867003 - 1866924
Alignment:
Q  349 attaccctatccatatctaacggggatgaaaaattgattctcgtccctgtcttcaataggttcgggtattccagcctcat 428  Q
    ||||||||  ||||||||||||||||||||||||||| |||| |||| |||| || | ||||||| |||||| |||||||    
T  1867003 attaccctgcccatatctaacggggatgaaaaattgaatctcatccccgtctccattgggttcggatattcccgcctcat 1866924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 424
Target Start/End: Original strand, 18423196 - 18423344
Alignment:
Q  270 atattgagtaggcatggcaatgggg--tggggatgggttttacctccccatctccatctccctactcccttatatttatctattaccctatccatatcta 367  Q
    |||||||||||||||| ||||||||  |||||| |||||||||||||     |||||   || |||||| ||||||||  | |||||||||| ||| |||    
T  18423196 atattgagtaggcatgacaatgggggatggggacgggttttacctcc-----tccatt--ccgactcccatatatttacatgttaccctatc-ataccta 18423287  T
Q  368 acggggatgaaaaattgattctcgtccctgtcttcaataggttcgggtattccagcc 424  Q
    |||||||||| |||||||||||| |||  |||  ||||| ||| |||||||||||||    
T  18423288 acggggatgagaaattgattctcatcctcgtccccaatatgtttgggtattccagcc 18423344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 415
Target Start/End: Original strand, 45064921 - 45065023
Alignment:
Q  312 tccccatctccatctccctactcccttatatttatctattaccctatccatatctaacggggatgaaaaattgattctcgtccctgtcttcaataggttc 411  Q
    |||||||||||||| | |||||| | |||| ||| |  ||| |||||||||||| ||||||||||| ||||||| |||| ||||||||  |||| |||||    
T  45064921 tccccatctccatc-cactactctcatatacttacccgttatcctatccatatccaacggggatgagaaattgaatctcatccctgtccccaatgggttc 45065019  T
Q  412 gggt 415  Q
    ||||    
T  45065020 gggt 45065023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 420
Target Start/End: Original strand, 21544200 - 21544328
Alignment:
Q  292 gggtggggatgggttttacct-ccccatctccatctccctactcccttatatttatctattaccctatccatatctaacggggatgaaaaattgattctc 390  Q
    ||||||||| ||||||| ||| ||||||||||||| ||||||| || |||| ||| || ||||| || ||||| | ||||||||||| ||||||| |||     
T  21544200 gggtggggacgggttttgccttccccatctccatc-ccctacttccatatacttagctgttaccttacccatacccaacggggatgagaaattgaatcta 21544298  T
Q  391 gtccctgtcttcaataggttcgggtattcc 420  Q
     || | |||  ||||| |||||||||||||    
T  21544299 atctccgtccccaataagttcgggtattcc 21544328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 395
Target Start/End: Complemental strand, 47239790 - 47239733
Alignment:
Q  338 tatatttatctattaccctatccatatctaacggggatgaaaaattgattctcgtccc 395  Q
    ||||||||||  |||||||||||||||| ||||||||||| ||||||| |||| ||||    
T  47239790 tatatttatccgttaccctatccatatcaaacggggatgagaaattgaatctcatccc 47239733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 420
Target Start/End: Original strand, 11172647 - 11172717
Alignment:
Q  350 ttaccctatccatatctaacggggatgaaaaattgattctcgtccctgtcttcaataggttcgggtattcc 420  Q
    |||||||| ||||||| ||||||||||| ||||||| || | |||| |||  |||| ||||||||||||||    
T  11172647 ttaccctacccatatccaacggggatgagaaattgaatcccatccccgtccccaatgggttcgggtattcc 11172717  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 420
Target Start/End: Complemental strand, 15733924 - 15733864
Alignment:
Q  360 catatctaacggggatgaaaaattgattctcgtccctgtcttcaataggttcgggtattcc 420  Q
    ||||||||| |||||||| |||||||  ||| |||| |||| |||| ||||||||||||||    
T  15733924 catatctaatggggatgagaaattgagactcatccccgtctccaatgggttcgggtattcc 15733864  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 419
Target Start/End: Complemental strand, 41915404 - 41915312
Alignment:
Q  327 ccctactcccttatatttatctattaccctatccatatctaacggggatgaaaaattgattctcgtccctgtcttcaataggttcgggtattc 419  Q
    |||||||| | |||| ||| || ||||||||| |||||  ||||||||||| ||||||| || | |||| |||  |||||| |||||||||||    
T  41915404 ccctactctcgtatacttacctgttaccctattcatattcaacggggatgagaaattgaatcgcatccccgtccccaatagattcgggtattc 41915312  T

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Target: scaffold0015 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 420
Target Start/End: Complemental strand, 56364 - 56241
Alignment:
Q  297 gggatgggttttacct-ccccatctccatctccctactcccttatatttatctattaccctatccatatctaacggggatgaaaaattgattctcgtccc 395  Q
    |||||||||||| ||| ||||||| ||||| |||||||||| |||| ||| |  |||||||| ||||||| ||| ||||||| ||||||| |||| ||||    
T  56364 gggatgggttttgccttccccatccccatc-ccctactcccatatacttacccgttaccctacccatatccaacagggatgagaaattgaatctcatccc 56266  T
Q  396 tgtcttcaataggttcgggtattcc 420  Q
    | ||  |||| ||||||||||||||    
T  56265 tatccccaatgggttcgggtattcc 56241  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 291 - 420
Target Start/End: Complemental strand, 23045465 - 23045336
Alignment:
Q  291 ggggtggggatgggttttacct-ccccatctccatctccctactcccttatatttatctattaccctatccatatctaacggggatgaaaaattgattct 389  Q
    |||||||||| |||||||  || ||||||| ||||| |||||||||| |||| ||| |  |||||||| ||||||| ||||||||||| ||||||| ||     
T  23045465 ggggtggggacgggttttgtcttccccatccccatc-ccctactcccatatacttacccgttaccctacccatatccaacggggatgagaaattgaatcc 23045367  T
Q  390 cgtccctgtcttcaataggttcgggtattcc 420  Q
    | |||| |||  |||| ||||||||||||||    
T  23045366 catccccgtccccaatgggttcgggtattcc 23045336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 395
Target Start/End: Original strand, 12235820 - 12235924
Alignment:
Q  291 ggggtggggatgggttttacct-ccccatctccatctccctactcccttatatttatctattaccctatccatatctaacggggatgaaaaattgattct 389  Q
    |||||||| | ||||||| ||| ||||||| | ||| |||||||||| |||||||| |  |||||||| ||||||| || |||||||||||||||| |||    
T  12235820 ggggtgggaacgggttttgccttccccatccctatc-ccctactcccatatatttacccgttaccctacccatatccaaaggggatgaaaaattgaatct 12235918  T
Q  390 cgtccc 395  Q
    | ||||    
T  12235919 catccc 12235924  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 420
Target Start/End: Original strand, 20633843 - 20633925
Alignment:
Q  338 tatatttatctattaccctatccatatctaacggggatgaaaaattgattctcgtccctgtcttcaataggttcgggtattcc 420  Q
    |||||||||| |||| |||||||||||  ||| | ||||||||||||| |||| |||| |||  | || ||||||||||||||    
T  20633843 tatatttatccattatcctatccatattcaactgcgatgaaaaattgaatctcatccccgtccccgatgggttcgggtattcc 20633925  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 420
Target Start/End: Original strand, 20649957 - 20650039
Alignment:
Q  338 tatatttatctattaccctatccatatctaacggggatgaaaaattgattctcgtccctgtcttcaataggttcgggtattcc 420  Q
    |||||||||| |||| |||||||||||  ||| | ||||||||||||| |||| |||| |||  | || ||||||||||||||    
T  20649957 tatatttatccattatcctatccatattcaactgcgatgaaaaattgaatctcatccccgtccccgatgggttcgggtattcc 20650039  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 428
Target Start/End: Complemental strand, 12712942 - 12712841
Alignment:
Q  327 ccctactcccttatatttatctattaccctatccatatctaacggggatgaaaaattgattctcgtccctgtcttcaataggttcgggtattccagcctc 426  Q
    |||||||||| |||| ||| |  |||||||| |||||||  |||||||| | ||||||| |||| |||  |||  |||| |||||||||||||| |||||    
T  12712942 ccctactcccatatacttacccgttaccctacccatatccgacggggataagaaattgaatctcatcctcgtccccaatgggttcgggtattcctgcctc 12712843  T
Q  427 at 428  Q
    ||    
T  12712842 at 12712841  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 428
Target Start/End: Complemental strand, 10450475 - 10450397
Alignment:
Q  350 ttaccctatccatatctaacggggatgaaaaattgattctcgtccctgtcttcaataggttcgggtattccagcctcat 428  Q
    |||||||||| ||||| ||||||||||| ||||||| || |||||| ||| | ||| |||||||||||||| |||||||    
T  10450475 ttaccctatcaatatccaacggggatgagaaattgaatcccgtccccgtccttaatgggttcgggtattcccgcctcat 10450397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 385
Target Start/End: Complemental strand, 49742325 - 49742278
Alignment:
Q  338 tatatttatctattaccctatccatatctaacggggatgaaaaattga 385  Q
    ||||||||||  |||||||||||||||||||||||||||| |||||||    
T  49742325 tatatttatccgttaccctatccatatctaacggggatgagaaattga 49742278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 430
Target Start/End: Complemental strand, 16237717 - 16237638
Alignment:
Q  351 taccctatccatatctaacggggatgaaaaattgattctcgtccctgtcttcaataggttcgggtattccagcctcattc 430  Q
    ||||||| | ||||| ||||| ||||| ||||||| |||| ||||||||  |||| ||||||||||||||| || |||||    
T  16237717 taccctacctatatccaacggagatgagaaattgaatctcatccctgtccccaatgggttcgggtattccaaccccattc 16237638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 430
Target Start/End: Original strand, 17516096 - 17516176
Alignment:
Q  350 ttaccctatccatatctaacggggatgaaaaattgattctcgtccctgtcttcaataggttcgggtattccagcctcattc 430  Q
    ||||||||| |||||| || || ||||| ||||| | ||||  ||| ||||||||| |||||||||||||| | |||||||    
T  17516096 ttaccctattcatatccaatggagatgagaaattaaatctcacccccgtcttcaatgggttcgggtattcccggctcattc 17516176  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 395
Target Start/End: Original strand, 45379818 - 45379875
Alignment:
Q  338 tatatttatctattaccctatccatatctaacggggatgaaaaattgattctcgtccc 395  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||||| |||| ||||    
T  45379818 tatatttatctgttaccctacccatatctaacggggatgagaaattgaatctcatccc 45379875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 428
Target Start/End: Original strand, 43217894 - 43218039
Alignment:
Q  277 gtaggcatggcaatggggtggggatgggttttacctccccatctccatctccctactcccttatatttatctattaccctatccatatctaacggggatg 376  Q
    ||||||||||||||||||||||||  |||||| ||| |||     |||| |||||||  | |||| |||  | |||||||| ||||||||||||| ||||    
T  43217894 gtaggcatggcaatggggtggggacaggttttgccttccc-----catc-ccctactttcatatacttacttgttaccctacccatatctaacggagatg 43217987  T
Q  377 aaaaattgattctcgtccctgtcttcaataggttcgggtattccagcctcat 428  Q
    | ||||||| |||| || | |||  |||| |||||||||||||| |||||||    
T  43217988 agaaattgaatctcatctccgtccccaatgggttcgggtattcccgcctcat 43218039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 395
Target Start/End: Original strand, 7779648 - 7779753
Alignment:
Q  290 tggggtggggatgggttttacct-ccccatctccatctccctactcccttatatttatctattaccctatccatatctaacggggatgaaaaattgattc 388  Q
    ||||||||||| ||||||||||| |||| || ||||  ||| | || | |||| |||||| |||||||| ||||||| ||||||||||| ||||||| ||    
T  7779648 tggggtggggacgggttttaccttccccgtccccata-cccgattctcgtatacttatctgttaccctacccatatccaacggggatgagaaattgaatc 7779746  T
Q  389 tcgtccc 395  Q
    || ||||    
T  7779747 tcatccc 7779753  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 395
Target Start/End: Complemental strand, 18125616 - 18125575
Alignment:
Q  354 cctatccatatctaacggggatgaaaaattgattctcgtccc 395  Q
    |||||||||||||||||||||||| ||||||| |||| ||||    
T  18125616 cctatccatatctaacggggatgagaaattgaatctcatccc 18125575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 395
Target Start/End: Complemental strand, 45886216 - 45886112
Alignment:
Q  291 ggggtggggatgggttttacct-ccccatctccatctccctactcccttatatttatctattaccctatccatatctaacggggatgaaaaattgattct 389  Q
    ||||||| |||||||||||||| |||| |||||||  ||| | || | |||| ||| || |||||||| ||||||| ||||||||||| ||||||| |||    
T  45886216 ggggtggagatgggttttaccttccccgtctccata-cccaattctcatatacttacctgttaccctacccatatccaacggggatgagaaattgaatct 45886118  T
Q  390 cgtccc 395  Q
    | ||||    
T  45886117 catccc 45886112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 385
Target Start/End: Original strand, 27062755 - 27062862
Alignment:
Q  278 taggcatggcaatggggtggggatgggttttacc-tccccatctccatctccctactcccttatatttatctattaccctatccatatctaacggggatg 376  Q
    ||||||||||||||||| ||||| ||||||| || ||||||||  |||| |||||||| | |||| |||  |  ||||||| ||||| | ||||||||||    
T  27062755 taggcatggcaatggggcggggacgggtttttccttccccatcctcatc-ccctactctcatatacttacttgctaccctacccatacccaacggggatg 27062853  T
Q  377 aaaaattga 385  Q
    | |||||||    
T  27062854 agaaattga 27062862  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 431
Target Start/End: Complemental strand, 30839531 - 30839467
Alignment:
Q  367 aacggggatgaaaaattgattctcgtccctgtcttcaataggttcgggtattccagcctcattct 431  Q
    ||||||||||| ||||||| |||| |||| |||  |||| ||||||||||||||  |||||||||    
T  30839531 aacggggatgagaaattgaatctcatccccgtccccaatgggttcgggtattcccccctcattct 30839467  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 396
Target Start/End: Original strand, 9458335 - 9458440
Alignment:
Q  291 ggggtggggatgggttttacct-ccccatctccatctccctactcccttatatttatctattaccctatccatatctaacggggatgaaaaattgattct 389  Q
    |||||||||| ||||||| ||| ||||||| ||||| |||||||||| |||| ||| |  |||||||| ||||| | ||||||||||| ||||||| |||    
T  9458335 ggggtggggacgggtttttccttccccatccccatc-ccctactcccatatacttacccgttaccctacccatacccaacggggatgagaaattgaatct 9458433  T
Q  390 cgtccct 396  Q
    | |||||    
T  9458434 catccct 9458440  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 428
Target Start/End: Original strand, 32052752 - 32052830
Alignment:
Q  350 ttaccctatccatatctaacggggatgaaaaattgattctcgtccctgtcttcaataggttcgggtattccagcctcat 428  Q
    |||||||| ||||||| ||||||||||| ||||||| |||| |||| |||| |||  ||||| ||||| || |||||||    
T  32052752 ttaccctacccatatccaacggggatgagaaattgaatctcatccccgtctccaacgggttccggtatccccgcctcat 32052830  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 395
Target Start/End: Original strand, 3546781 - 3546882
Alignment:
Q  294 gtggggatgggttttacct-ccccatctccatctccctactcccttatatttatctattaccctatccatatctaacggggatgaaaaattgattctcgt 392  Q
    ||||||| ||||||| ||| ||||||| ||||| |||||||| | |||| ||| |  |||||||||||||| ||||||||||||| ||||||| |||| |    
T  3546781 gtggggacgggttttgccttccccatccccatc-ccctactctcatatacttaccccttaccctatccatagctaacggggatgagaaattgaatctcat 3546879  T
Q  393 ccc 395  Q
    |||    
T  3546880 ccc 3546882  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 418
Target Start/End: Original strand, 18485298 - 18485403
Alignment:
Q  312 tccccatctccatctccctactcccttatatttatctattaccctatccatatctaacggggatgaaaaattgattctcgtccctgtcttcaataggttc 411  Q
    |||||||| ||||| |||||||||  |||| ||| || |||||||| ||||||| ||||||||||| ||||||| || | |||| |||  |||| |||||    
T  18485298 tccccatccccatc-ccctactcctatatacttacctgttaccctacccatatccaacggggatgagaaattgaatcccatccccgtccccaatgggttc 18485396  T
Q  412 gggtatt 418  Q
    |||||||    
T  18485397 gggtatt 18485403  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 385
Target Start/End: Original strand, 10920300 - 10920394
Alignment:
Q  291 ggggtggggatgggttttacct-ccccatctccatctccctactcccttatatttatctattaccctatccatatctaacggggatgaaaaattga 385  Q
    |||||||||| |||||||| || ||||||||||||  ||||| || | |||| ||| || |||||||| ||||||| ||||||||||| |||||||    
T  10920300 ggggtggggacgggttttatcttccccatctccata-ccctattctcatatacttacctgttaccctacccatatccaacggggatgagaaattga 10920394  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 420
Target Start/End: Original strand, 44057550 - 44057620
Alignment:
Q  350 ttaccctatccatatctaacggggatgaaaaattgattctcgtccctgtcttcaataggttcgggtattcc 420  Q
    ||||||||  ||||||  |||||||||||||||||| |||| |||| |||  |||| ||||||||||||||    
T  44057550 ttaccctactcatatccgacggggatgaaaaattgaatctcatccccgtccccaatgggttcgggtattcc 44057620  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 420
Target Start/End: Original strand, 26755407 - 26755500
Alignment:
Q  327 ccctactcccttatatttatctattaccctatccatatctaacggggatgaaaaattgattctcgtccctgtcttcaataggttcgggtattcc 420  Q
    |||||||||| |||| ||| | ||||||||| ||||| | ||||||||||| ||||||| |||| |||| |||  ||||   ||||||||||||    
T  26755407 ccctactcccatatacttacccattaccctacccatacccaacggggatgagaaattgaatctcatccccgtccccaatcaattcgggtattcc 26755500  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 395
Target Start/End: Original strand, 45256508 - 45256565
Alignment:
Q  338 tatatttatctattaccctatccatatctaacggggatgaaaaattgattctcgtccc 395  Q
    ||||||||||  |||||||| | ||||||||||||||||| ||||||| |||| ||||    
T  45256508 tatatttatccgttaccctacctatatctaacggggatgagaaattgaatctcatccc 45256565  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 10212063 - 10212111
Alignment:
Q  278 taggcatggcaatggggtggggatgggttttacc-tccccatctccatc 325  Q
    ||||||||||||||||| ||||| |||||||||| |||||||| |||||    
T  10212063 taggcatggcaatggggcggggacgggttttaccttccccatccccatc 10212111  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 420
Target Start/End: Complemental strand, 15069023 - 15068930
Alignment:
Q  327 ccctactcccttatatttatctattaccctatccatatctaacggggatgaaaaattgattctcgtccctgtcttcaataggttcgggtattcc 420  Q
    |||||||||| |||| ||| || |||||||| ||||| | ||||||||||| ||||||| |||| | || |||  |||| ||||||||||||||    
T  15069023 ccctactcccatatacttacctgttaccctacccatacccaacggggatgagaaattgaatctcattcccgtccccaatgggttcgggtattcc 15068930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 420
Target Start/End: Complemental strand, 15174324 - 15174195
Alignment:
Q  291 ggggtggggatgggttttacct-ccccatctccatctccctactcccttatatttatctattaccctatccatatctaacggggatgaaaaattgattct 389  Q
    ||||||||||| |||||  ||| ||||||| ||||| ||| |||||| |||| ||| || |||||||| ||||||  || |||||||| ||||||| |||    
T  15174324 ggggtggggataggtttcgccttccccatcaccatc-cccgactcccatatacttacctgttaccctacccatattcaatggggatgagaaattgaatct 15174226  T
Q  390 cgtccctgtcttcaataggttcgggtattcc 420  Q
      |||| |||  |||| ||||||||||||||    
T  15174225 tatccccgtccccaatgggttcgggtattcc 15174195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 428
Target Start/End: Original strand, 34776103 - 34776236
Alignment:
Q  295 tggggatgggttttacct-ccccatctccatctccctactcccttatatttatctattaccctatccatatctaacggggatgaaaaattgattctcgtc 393  Q
    |||||| ||||||||||| ||||||||||||  ||| | || | |||||||| || ||| |||| ||||||| ||||||||||| ||||||| |||| ||    
T  34776103 tggggacgggttttaccttccccatctccata-cccgattctcatatatttacctgttaacctacccatatccaacggggatgagaaattgaatctcatc 34776201  T
Q  394 cctgtcttcaataggttcgggtattccagcctcat 428  Q
    || |||  |||  ||||||| ||| || |||||||    
T  34776202 cccgtccccaacgggttcggatatccccgcctcat 34776236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1630 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1630
Description:

Target: scaffold1630; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 390
Target Start/End: Original strand, 1307 - 1359
Alignment:
Q  338 tatatttatctattaccctatccatatctaacggggatgaaaaattgattctc 390  Q
    |||| |||||| |||||||||||||| ||||||||||||| ||||||| ||||    
T  1307 tatacttatctgttaccctatccatacctaacggggatgagaaattgaatctc 1359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 40796535 - 40796482
Alignment:
Q  367 aacggggatgaaaaattgattctcgtccctgtcttcaataggttcgggtattcc 420  Q
    ||||||||||| ||||||| |||| |||| |||  |||||||||||||||||||    
T  40796535 aacggggatgagaaattgaatctcatccccgtccccaataggttcgggtattcc 40796482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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