View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9895_high_11 (Length: 245)
Name: NF9895_high_11
Description: NF9895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9895_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 59 - 238
Target Start/End: Original strand, 51220995 - 51221174
Alignment:
| Q |
59 |
tgatatcaaactctcaacgtagacttgtggtggtgccattttatcattgttgttgttttgaattattgtaggaatcttaaatgtattatttatggaatca |
158 |
Q |
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| T |
51220995 |
tgatatcaaactcttaacgtagacttgtggtggtgccattttatcattgttgttgttttgaattattgtaggaatcttaaatgtattatttatggaatca |
51221094 |
T |
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| Q |
159 |
tagataaccaaactaaatttccccgaagatataaactccattagcacttggttatcctctgaaatatataataccctttg |
238 |
Q |
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| T |
51221095 |
tagataaccaaactaaatttccccgaagatataaactccattagcacttgtttatcctctgaaatatataataccctttg |
51221174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 51220890 - 51220941
Alignment:
| Q |
1 |
ataaataacaagatcatttcatcgaagaaaaagacgagtctctaggctgcag |
52 |
Q |
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| T |
51220890 |
ataaataacaagatcatttcatcgaagaaaaagacgagtctctaggctgcag |
51220941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 51762779 - 51762834
Alignment:
| Q |
127 |
taggaatcttaaatgtattatttatggaatcatagataaccaaactaaatttcccc |
182 |
Q |
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| T |
51762779 |
taggaatcttaaaagtatcatttatggaaccatagacaaccaaactaaatttcccc |
51762834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 51756604 - 51756654
Alignment:
| Q |
128 |
aggaatcttaaatgtattatttatggaatcatagataaccaaactaaattt |
178 |
Q |
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| T |
51756604 |
aggaatcttaaaagtatcatttatggaatcatagaaagccaaactaaattt |
51756654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 51858809 - 51858756
Alignment:
| Q |
128 |
aggaatcttaaatgtattatttatggaatcatagataaccaaactaaatttccc |
181 |
Q |
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||||||||| ||||||| ||| ||||||||||||| | |||| ||||||||||| |
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| T |
51858809 |
aggaatcttcaatgtatcattaatggaatcatagacagccaacctaaatttccc |
51858756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 84
Target Start/End: Original strand, 23898458 - 23898486
Alignment:
| Q |
56 |
aggtgatatcaaactctcaacgtagactt |
84 |
Q |
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| T |
23898458 |
aggtgatatcaaactctcaacgtagactt |
23898486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 84
Target Start/End: Original strand, 51762699 - 51762727
Alignment:
| Q |
56 |
aggtgatatcaaactctcaacgtagactt |
84 |
Q |
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| T |
51762699 |
aggtgatatcaaactctcaacgtagactt |
51762727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 4182849 - 4182901
Alignment:
| Q |
128 |
aggaatcttaaatgtattatttatggaatcatagataaccaaactaaatttcc |
180 |
Q |
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|||||||||| | |||| ||||||||||||||||| | ||||||||||||||| |
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| T |
4182849 |
aggaatcttataagtatcatttatggaatcatagacagccaaactaaatttcc |
4182901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 4743693 - 4743745
Alignment:
| Q |
128 |
aggaatcttaaatgtattatttatggaatcatagataaccaaactaaatttcc |
180 |
Q |
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| T |
4743693 |
aggaatcttataagtatcatttatggaatcatagacagccaaactaaatttcc |
4743745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 1438257 - 1438224
Alignment:
| Q |
56 |
aggtgatatcaaactctcaacgtagacttgtggt |
89 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
1438257 |
aggtgatatcaaactctcaacgtagacttctggt |
1438224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 84
Target Start/End: Original strand, 783602 - 783630
Alignment:
| Q |
56 |
aggtgatatcaaactctcaacgtagactt |
84 |
Q |
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| T |
783602 |
aggtgatatcaaactctcaacgtagactt |
783630 |
T |
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