View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9895_high_3 (Length: 391)

Name: NF9895_high_3
Description: NF9895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9895_high_3
NF9895_high_3
[»] chr7 (20 HSPs)
chr7 (25-258)||(4886976-4887208)
chr7 (258-352)||(4886848-4886942)
chr7 (261-359)||(41331048-41331148)
chr7 (260-365)||(40518857-40518964)
chr7 (258-363)||(23274780-23274887)
chr7 (252-363)||(36931970-36932083)
chr7 (257-359)||(45284784-45284888)
chr7 (277-362)||(35950126-35950213)
chr7 (258-363)||(41853994-41854101)
chr7 (277-362)||(42443687-42443774)
chr7 (258-327)||(7836902-7836972)
chr7 (263-360)||(44831593-44831691)
chr7 (277-360)||(36391889-36391974)
chr7 (276-328)||(37411721-37411774)
chr7 (258-357)||(38151347-38151448)
chr7 (280-321)||(41853680-41853721)
chr7 (276-328)||(47440794-47440847)
chr7 (261-328)||(25155574-25155642)
chr7 (258-352)||(47542943-47543038)
chr7 (258-298)||(49089564-49089604)
[»] chr5 (12 HSPs)
chr5 (258-351)||(41083504-41083598)
chr5 (258-364)||(20145530-20145638)
chr5 (260-363)||(4067979-4068084)
chr5 (277-360)||(43580878-43580963)
chr5 (276-344)||(28758401-28758472)
chr5 (276-362)||(41179787-41179875)
chr5 (263-364)||(3198323-3198426)
chr5 (258-328)||(8571826-8571897)
chr5 (277-362)||(11897246-11897333)
chr5 (277-362)||(21749363-21749449)
chr5 (276-328)||(33018510-33018562)
chr5 (277-321)||(37182583-37182627)
[»] chr3 (17 HSPs)
chr3 (258-363)||(24303387-24303494)
chr3 (258-351)||(4227710-4227805)
chr3 (277-363)||(49983693-49983781)
chr3 (277-362)||(28689657-28689744)
chr3 (260-328)||(19222554-19222623)
chr3 (276-363)||(25883972-25884062)
chr3 (276-328)||(43280101-43280154)
chr3 (257-328)||(26880210-26880282)
chr3 (257-328)||(54408515-54408587)
chr3 (277-362)||(10482838-10482925)
chr3 (277-362)||(52945893-52945979)
chr3 (276-363)||(14795108-14795197)
chr3 (257-328)||(15005974-15006047)
chr3 (276-351)||(38949683-38949760)
chr3 (276-363)||(46844955-46845044)
chr3 (257-328)||(29531247-29531319)
chr3 (258-363)||(44764719-44764824)
[»] chr2 (15 HSPs)
chr2 (258-363)||(20919607-20919714)
chr2 (260-352)||(3596258-3596352)
chr2 (276-364)||(11949980-11950070)
chr2 (275-363)||(4858685-4858774)
chr2 (287-363)||(23405193-23405271)
chr2 (276-344)||(44558019-44558088)
chr2 (261-363)||(1964350-1964454)
chr2 (263-364)||(13242702-13242805)
chr2 (277-362)||(17034733-17034820)
chr2 (277-362)||(22653629-22653716)
chr2 (276-357)||(23919461-23919544)
chr2 (276-364)||(2145719-2145809)
chr2 (279-362)||(11050744-11050829)
chr2 (277-321)||(17089283-17089328)
chr2 (276-362)||(3446728-3446816)
[»] chr1 (25 HSPs)
chr1 (258-359)||(11333665-11333768)
chr1 (258-359)||(11491686-11491789)
chr1 (258-361)||(36666542-36666647)
chr1 (258-363)||(31124604-31124711)
chr1 (257-328)||(45416143-45416215)
chr1 (257-363)||(47469038-47469146)
chr1 (258-328)||(23991230-23991301)
chr1 (276-363)||(8741470-8741559)
chr1 (276-359)||(43021606-43021691)
chr1 (277-362)||(6130018-6130105)
chr1 (258-363)||(19564119-19564225)
chr1 (277-362)||(32594249-32594336)
chr1 (277-362)||(42490395-42490482)
chr1 (276-355)||(45180506-45180585)
chr1 (258-328)||(50119005-50119076)
chr1 (263-363)||(11860039-11860141)
chr1 (276-363)||(29204642-29204731)
chr1 (276-336)||(49503134-49503195)
chr1 (277-321)||(3694901-3694945)
chr1 (277-321)||(8984491-8984535)
chr1 (261-363)||(18607778-18607882)
chr1 (258-364)||(30245990-30246098)
chr1 (258-325)||(34557289-34557357)
chr1 (257-324)||(39670794-39670862)
chr1 (274-321)||(50537004-50537052)
[»] chr4 (14 HSPs)
chr4 (258-361)||(51890796-51890901)
chr4 (260-357)||(29406360-29406459)
chr4 (258-328)||(2629612-2629683)
chr4 (258-363)||(32293105-32293212)
chr4 (276-328)||(13088942-13088995)
chr4 (257-325)||(38848085-38848154)
chr4 (258-328)||(12625862-12625933)
chr4 (258-363)||(23924838-23924945)
chr4 (258-328)||(42664014-42664085)
chr4 (261-327)||(46791177-46791244)
chr4 (276-360)||(45139865-45139951)
chr4 (276-328)||(11294822-11294875)
chr4 (258-361)||(42002305-42002410)
chr4 (277-360)||(43978008-43978092)
[»] chr8 (16 HSPs)
chr8 (263-364)||(481007-481110)
chr8 (258-363)||(12770365-12770472)
chr8 (277-362)||(17027866-17027952)
chr8 (277-362)||(17558302-17558388)
chr8 (278-363)||(42877031-42877117)
chr8 (257-364)||(30676269-30676378)
chr8 (257-362)||(14876566-14876674)
chr8 (277-362)||(17698520-17698607)
chr8 (258-328)||(25824868-25824939)
chr8 (258-328)||(43846968-43847039)
chr8 (277-357)||(25890389-25890471)
chr8 (277-357)||(27077082-27077164)
chr8 (276-363)||(13059161-13059250)
chr8 (300-360)||(24517295-24517356)
chr8 (258-364)||(11231416-11231524)
chr8 (258-321)||(22274577-22274641)
[»] chr6 (10 HSPs)
chr6 (258-328)||(32620037-32620108)
chr6 (300-363)||(20568294-20568358)
chr6 (277-362)||(15091446-15091533)
chr6 (291-360)||(16801786-16801857)
chr6 (258-362)||(24319011-24319117)
chr6 (258-327)||(32788820-32788890)
chr6 (258-334)||(8443566-8443643)
chr6 (258-334)||(8452370-8452447)
chr6 (303-359)||(23610331-23610388)
chr6 (300-363)||(34268279-34268343)
[»] scaffold0257 (1 HSPs)
scaffold0257 (258-363)||(21791-21898)
[»] scaffold0154 (1 HSPs)
scaffold0154 (260-352)||(28789-28883)
[»] scaffold0250 (1 HSPs)
scaffold0250 (258-359)||(15006-15109)
[»] scaffold0519 (1 HSPs)
scaffold0519 (258-364)||(2928-3036)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 25 - 258
Target Start/End: Complemental strand, 4887208 - 4886976
Alignment:
Q  25 catataaaagttttgccactacaattagtgggtcacgaaggttttcaattgtaaatgacacaactgactgactcaatcgttatcattattttgtcacctg 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  4887208 catataaaagttttgccactacaattagtgggtcacgaaggttttcaattgtaaatgacaca-ctgactgactcaatcgttatgattattttgtcacctg 4887110  T
Q  125 caaaaaagttataataaggtaagctttgattaaacctgacatggacactttgattaagatttgaatattgaacaaccatattttccacatgacaactagt 224  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  4887109 caaaaaagttctaataaggtaagctttgattaaacctgacatggtcactttgattaagatttgaatattgaacaagcatattttccacatgacaactact 4887010  T
Q  225 cggatgtacataataaataagcctacactagttt 258  Q
    | ||||||||||||||||||||||||||||||||    
T  4887009 cagatgtacataataaataagcctacactagttt 4886976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 258 - 352
Target Start/End: Complemental strand, 4886942 - 4886848
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgtcctaccaacttagctaag 352  Q
    ||||| ||||| ||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| |||||||    
T  4886942 tagagttcacacaattatatgtggagaagtggggtgtccggattcgaaccccgacccttgcataaattatgccatgtcctaccaactaagctaag 4886848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 41331048 - 41331148
Alignment:
Q  261 agctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacg 358  Q
    |||||||| ||| | |||||||||| ||||||||||||| ||||||||||||| |||||||||||||||  |||| ||| |||||| ||||||| |||||    
T  41331048 agctcacacaattaaatgtggagaagtggggtgtccggaattcgaaccccgacccctgcataaattatgcaatgtccctgccaactgagctaagctcacg 41331147  T
Q  359 g 359  Q
    |    
T  41331148 g 41331148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 260 - 365
Target Start/End: Original strand, 40518857 - 40518964
Alignment:
Q  260 gagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcac 357  Q
    ||||||||| ||| | |||||||||| ||||||||||||| |||||| ||| || ||| |||| ||||||  |||||| |||||||| ||||||||||||    
T  40518857 gagctcacacaattaaatgtggagaagtggggtgtccggagttcgaatcccaacccctacatatattatgcaatgtccctaccaactgagctaagttcac 40518956  T
Q  358 ggggacgc 365  Q
    ||||||||    
T  40518957 ggggacgc 40518964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 363
Target Start/End: Original strand, 23274780 - 23274887
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttc 355  Q
    ||||||||||| ||| |  |||||| || ||||||||||||  ||||||| ||| | |||||||||||||||  |||||| |||||||||||||||| ||    
T  23274780 tagagctcacacaattaattgtggaaaaatggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctaccaacttagctaagctc 23274879  T
Q  356 acggggac 363  Q
    ||||||||    
T  23274880 acggggac 23274887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 363
Target Start/End: Complemental strand, 36932083 - 36931970
Alignment:
Q  252 ctagtttagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagct 349  Q
    ||||| ||||||||||| ||| | |||| ||||| |||||||||| || |||||||||||   |||||||||||||||  |||| ||| |||||| ||||    
T  36932083 ctagtatagagctcacacaattaaatgtagagaagtggggtgtccggggttcgaaccccggaccctgcataaattatgcaatgtccctgccaactgagct 36931984  T
Q  350 aagttcacggggac 363  Q
    |||||||| |||||    
T  36931983 aagttcacagggac 36931970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 359
Target Start/End: Original strand, 45284784 - 45284888
Alignment:
Q  257 ttagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagtt 354  Q
    |||||||||||| ||| | |||| ||||| ||||||||||||  ||||||||||||| ||||||||||||||   |||| |||| ||||| ||||||| |    
T  45284784 ttagagctcacacaattaaatgttgagaagtggggtgtccggggttcgaaccccgacccctgcataaattattcaatgtccctatcaactgagctaagct 45284883  T
Q  355 cacgg 359  Q
    |||||    
T  45284884 cacgg 45284888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 362
Target Start/End: Complemental strand, 35950213 - 35950126
Alignment:
Q  277 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 362  Q
    ||||||||| ||| ||||||||  |||||||||||||||||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  35950213 tgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 35950126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 363
Target Start/End: Complemental strand, 41854101 - 41853994
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    ||||||||||| ||| | ||||||||||  ||||||||| || || |||| ||| | |||||||||||||||  |||| ||| |||||| ||||||| ||    
T  41854101 tagagctcacataattaaatgtggagaagcggggtgtccggggtttgaactccgtcccctgcataaattatgcaatgtccctgccaactgagctaagctc 41854002  T
Q  356 acggggac 363  Q
    ||||||||    
T  41854001 acggggac 41853994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 362
Target Start/End: Complemental strand, 42443774 - 42443687
Alignment:
Q  277 tgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 362  Q
    ||||||||| ||| |||||||| |||||||||||| |||||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  42443774 tgtggagaagtggagtgtccgggattcgaaccccggctcctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 42443687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 7836902 - 7836972
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattat 327  Q
    ||||||||||| ||| | |||||||||| ||| |||| |||| ||||||||||||  ||||||||||||||    
T  7836902 tagagctcacacaattaaatgtggagaagtggtgtgttcggagttcgaaccccgatccctgcataaattat 7836972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 360
Target Start/End: Original strand, 44831593 - 44831691
Alignment:
Q  263 ctcacaaaatcatatgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacggg 360  Q
    |||||| ||| | |||||||||| |||||||||    ||||||| | ||| |||||||||||||||  |||||| |||||||| | |||||||||||||    
T  44831593 ctcacataattaaatgtggagaagtggggtgtctatgttcgaactctgacccctgcataaattatgcaatgtccctaccaactgatctaagttcacggg 44831691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 360
Target Start/End: Original strand, 36391889 - 36391974
Alignment:
Q  277 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggg 360  Q
    ||||||||| ||| ||||||||  |||||||||||||||||||||| | ||||  || | |||||||||| ||||||| |||||||    
T  36391889 tgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctaagctcacggg 36391974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 328
Target Start/End: Original strand, 37411721 - 37411774
Alignment:
Q  276 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatg 328  Q
    |||||||||| ||||||||||||| ||| ||| ||||| |||||||||||||||    
T  37411721 atgtggagaagtggggtgtccggagttcaaactccgacccctgcataaattatg 37411774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 357
Target Start/End: Complemental strand, 38151448 - 38151347
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccg-gattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    ||||||||||| ||| | |||||||||| |||||||| |  | ||||||||||||| ||||||||||| |||  || | |||||||||| ||||||| ||    
T  38151448 tagagctcacacaattaaatgtggagaagtggggtgttcatggttcgaaccccgacccctgcataaataatgcaatatccctaccaactgagctaagctc 38151349  T
Q  356 ac 357  Q
    ||    
T  38151348 ac 38151347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 41853721 - 41853680
Alignment:
Q  280 ggagaactggggtgtccggattcgaaccccgactcctgcata 321  Q
    |||||| |||||||||||| ||||||||||||||| ||||||    
T  41853721 ggagaagtggggtgtccgggttcgaaccccgactcttgcata 41853680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 328
Target Start/End: Original strand, 47440794 - 47440847
Alignment:
Q  276 atgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 328  Q
    |||||||||| |||||||||| || ||||||||||||| |||||||| ||||||    
T  47440794 atgtggagaagtggggtgtccagggttcgaaccccgacccctgcatatattatg 47440847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 328
Target Start/End: Complemental strand, 25155642 - 25155574
Alignment:
Q  261 agctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 328  Q
    |||||||| ||| | |||||||||| |||||||||| || ||||||||||||  |||||||||| ||||    
T  25155642 agctcacacaattaaatgtggagaagtggggtgtccagggttcgaaccccgaaccctgcataaaatatg 25155574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 352
Target Start/End: Original strand, 47542943 - 47543038
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatg-tcctaccaacttagctaag 352  Q
    ||||||||||||||| | || ||||||| |||| ||||||| |||||||||| | | |||||||||||||||  |||  |||||||||| |||||||    
T  47542943 tagagctcacaaaattaaatatggagaagtggg-tgtccgggattcgaaccctggcccctgcataaattatgcaatgcccctaccaactgagctaag 47543038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 49089604 - 49089564
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccgg 298  Q
    ||||||||||| ||| |||||||||||| ||||||||||||    
T  49089604 tagagctcacacaattatatgtggagaagtggggtgtccgg 49089564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 258 - 351
Target Start/End: Original strand, 41083504 - 41083598
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgtc-ctaccaacttagctaa 351  Q
    |||||||| |||||| | | |||||||| |||||||||||||||||||||||||| |||||||||||||||  ||||| ||||||||| ||||||    
T  41083504 tagagctcccaaaattaaacgtggagaagtggggtgtccggattcgaaccccgacccctgcataaattatgcaatgtctctaccaactgagctaa 41083598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 364
Target Start/End: Original strand, 20145530 - 20145638
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccg-gattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    ||||||||||| ||| | |||||||||| ||||||||||| | ||||||||||| | | |||||||||||||  || | |||||||||| ||||||||||    
T  20145530 tagagctcacacaattaaatgtggagaagtggggtgtccgaggttcgaaccccggcccttgcataaattatgcaatatccctaccaactaagctaagttc 20145629  T
Q  356 acggggacg 364  Q
    | |||||||    
T  20145630 atggggacg 20145638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 363
Target Start/End: Complemental strand, 4068084 - 4067979
Alignment:
Q  260 gagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcac 357  Q
    ||||||||| ||| | |||||||||| |||||||||| || |||||||| || | |||||||||| ||||   ||| |||||||||| ||||||| ||||    
T  4068084 gagctcacacaattaaatgtggagaagtggggtgtccggggttcgaacctcgccccctgcataaaatatgcattgtccctaccaactgagctaagctcac 4067985  T
Q  358 ggggac 363  Q
    ||||||    
T  4067984 ggggac 4067979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 360
Target Start/End: Complemental strand, 43580963 - 43580878
Alignment:
Q  277 tgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacggg 360  Q
    ||||||||| ||| |||||||| |||||||||||| |||||||||| | ||||  || ||| |||||||| |||||||||||||||    
T  43580963 tgtggagaagtggagtgtccgggattcgaaccccggctcctgcatataatatgcaatatccctaccaactgagctaagttcacggg 43580878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 28758401 - 28758472
Alignment:
Q  276 atgtggagaactggggtgtccgga--ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaact 344  Q
    |||||||||| || ||||||||||  || ||||||||||||||||||||||||||  |||| ||||||||||    
T  28758401 atgtggagaagtgaggtgtccggaggtttgaaccccgactcctgcataaattatgcaatgtccctaccaact 28758472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 41179787 - 41179875
Alignment:
Q  276 atgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 362  Q
    |||||||||| ||| |||||||| |||||||||||| |||||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  41179787 atgtggagaagtggagtgtccgggattcgaaccccggctcctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 41179875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 364
Target Start/End: Complemental strand, 3198426 - 3198323
Alignment:
Q  263 ctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacggg 360  Q
    |||||| ||| | |||||||||| | ||||||||||  |||||||| | || |||||||| ||||||  |||||| |||||||| ||||||| |||||||    
T  3198426 ctcacataattaaatgtggagaagtagggtgtccggggttcgaacctcaacccctgcatatattatgcaatgtccctaccaactgagctaagctcacggg 3198327  T
Q  361 gacg 364  Q
    ||||    
T  3198326 gacg 3198323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 8571897 - 8571826
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatg 328  Q
    ||||||||||| ||| | |||||||||| | |||||| |||  ||||||||||||| |||||||||||||||    
T  8571897 tagagctcacacaattaaatgtggagaagtagggtgttcggggttcgaaccccgacccctgcataaattatg 8571826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 362
Target Start/End: Complemental strand, 11897333 - 11897246
Alignment:
Q  277 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 362  Q
    ||||||||| ||| ||||||||  |||||||||||||||||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  11897333 tgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 11897246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 21749363 - 21749449
Alignment:
Q  277 tgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 362  Q
    ||||||||| ||| |||||||| ||||||| |||||||||||||| | ||||   | | |||||||||| ||||||| |||||||||    
T  21749363 tgtggagaagtggagtgtccgggttcgaacaccgactcctgcatataatatgcagtatccctaccaactgagctaagctcacgggga 21749449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 328
Target Start/End: Original strand, 33018510 - 33018562
Alignment:
Q  276 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatg 328  Q
    |||||||||| ||||||||||| | ||||||||||||| |||||||||||||||    
T  33018510 atgtggagaagtggggtgtccgaagttcgaaccccgac-cctgcataaattatg 33018562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 37182627 - 37182583
Alignment:
Q  277 tgtggagaactggggtgtccggattcgaaccccgactcctgcata 321  Q
    ||||||||| ||| ||||| || ||||||||||||||||||||||    
T  37182627 tgtggagaagtggagtgtcgggtttcgaaccccgactcctgcata 37182583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 258 - 363
Target Start/End: Complemental strand, 24303494 - 24303387
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||||||||||| | |||||||||||||||  |||| ||| |||||| ||||||| ||    
T  24303494 tagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctgccaactgagctaagctc 24303395  T
Q  356 acggggac 363  Q
    ||||||||    
T  24303394 acggggac 24303387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 351
Target Start/End: Original strand, 4227710 - 4227805
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaa 351  Q
    ||||||||||| ||| |  | ||||||| ||||||||||||| ||||||||||||| |||||||||||||||  |||| |||||||||| ||||||    
T  4227710 tagagctcacacaattaattatggagaagtggggtgtccggagttcgaaccccgacccctgcataaattatgcaatgtccctaccaactgagctaa 4227805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 363
Target Start/End: Original strand, 49983693 - 49983781
Alignment:
Q  277 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacggggac 363  Q
    ||||||||| | ||||||||||  |||||||||| || ||||||||||||||   |||||| |||||||| ||||||||||||||||||    
T  49983693 tgtggagaagtagggtgtccggggttcgaaccccaacccctgcataaattatacaatgtccctaccaactgagctaagttcacggggac 49983781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 28689657 - 28689744
Alignment:
Q  277 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacgggga 362  Q
    ||||||||| ||| ||||||||  |||||||||||||||||||||| | ||||  || ||| |||||||| |||||||||||||||||    
T  28689657 tgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctaagttcacgggga 28689744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 19222554 - 19222623
Alignment:
Q  260 gagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 328  Q
    ||||||||| ||| | |||||||||| |||||||||| || ||||||||||| | |||||||||||||||    
T  19222554 gagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatg 19222623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 363
Target Start/End: Original strand, 25883972 - 25884062
Alignment:
Q  276 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt---cctaccaacttagctaagttcacggggac 363  Q
    |||||||||| ||||||||||||  ||||||||||||| |||||||| |||||| ||| |   |||||||||| ||||||| ||||||||||    
T  25883972 atgtggagaagtggggtgtccggggttcgaaccccgacccctgcatatattatg-catttgtccctaccaactaagctaagctcacggggac 25884062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 43280154 - 43280101
Alignment:
Q  276 atgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatg 328  Q
    |||||||||| |||||||||||| |||||||||||| | |||||||||||||||    
T  43280154 atgtggagaagtggggtgtccgggattcgaaccccggcccctgcataaattatg 43280101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 26880282 - 26880210
Alignment:
Q  257 ttagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatg 328  Q
    |||||||||||| | | | |||||||||| ||||||||| | | ||||||||||||| |||||||||||||||    
T  26880282 ttagagctcacacatttaaatgtggagaagtggggtgtctgaagttcgaaccccgacccctgcataaattatg 26880210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 54408515 - 54408587
Alignment:
Q  257 ttagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 328  Q
    |||||||||||| ||| | ||||||| || |||||||||| || |||||||||||||  ||||||||||||||    
T  54408515 ttagagctcacataattaaatgtggaaaaatggggtgtccggggttcgaaccccgacctctgcataaattatg 54408587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 10482838 - 10482925
Alignment:
Q  277 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacgggga 362  Q
    ||||||||| ||| ||||||||| ||||||||||  |||||||||| | ||||  || ||| |||||||| |||||||||||||||||    
T  10482838 tgtggagaagtggagtgtccggagttcgaaccccagctcctgcatataatatgcaatatccctaccaactgagctaagttcacgggga 10482925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 362
Target Start/End: Complemental strand, 52945979 - 52945893
Alignment:
Q  277 tgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 362  Q
    ||||||||| ||| |||| ||| ||||||||||||| |||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  52945979 tgtggagaagtggagtgtacgggttcgaaccccgacccctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 52945893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 363
Target Start/End: Complemental strand, 14795197 - 14795108
Alignment:
Q  276 atgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgtc-ctaccaacttagctaagttcacggggac 363  Q
    |||||||||| |||||||||| || || |||||| | | |||||||| ||||||  ||||| ||||||||| ||||||| ||||||||||    
T  14795197 atgtggagaagtggggtgtccggggtttgaaccctggcacctgcatatattatgcaatgtcactaccaactaagctaagctcacggggac 14795108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 15006047 - 15005974
Alignment:
Q  257 ttagagctcacaaaatcatatgtggagaactgggg-tgtccgga-ttcgaaccccgactcctgcataaattatg 328  Q
    |||||||||||  ||| | |||||||||| || || |||||||| ||||||||||| |||||||||||||||||    
T  15006047 ttagagctcactcaattaaatgtggagaagtgtggatgtccggagttcgaaccccggctcctgcataaattatg 15005974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 351
Target Start/End: Complemental strand, 38949760 - 38949683
Alignment:
Q  276 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaa 351  Q
    |||||||||| |||||||| |||  ||||||||||| | |||||||||||||||  |||| |||||||||| ||||||    
T  38949760 atgtggagaagtggggtgttcggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaactgagctaa 38949683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 363
Target Start/End: Original strand, 46844955 - 46845044
Alignment:
Q  276 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggggac 363  Q
    |||||||||| | ||||||||||  ||||||| ||||| |||||||||||||||  |||| ||| |||| | ||||||| ||||||||||    
T  46844955 atgtggagaagtagggtgtccggggttcgaactccgacccctgcataaattatgcaatgtccctgccaattgagctaagctcacggggac 46845044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 29531319 - 29531247
Alignment:
Q  257 ttagagctcacaaaatcatatgtggagaactggggt-gtccggattcgaaccccgactcctgcataaattatg 328  Q
    |||||||||||| ||| | |||||||||| || ||| ||||||  |||||||||||| ||| |||||||||||    
T  29531319 ttagagctcacacaattaaatgtggagaagtgaggttgtccggggtcgaaccccgaccccttcataaattatg 29531247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 363
Target Start/End: Complemental strand, 44764824 - 44764719
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    ||||||||||| ||| | |||||||||| ||| |||||| || |||||||||   | |||||||||||||||  |||| |||||||||| ||||||| ||    
T  44764824 tagagctcacacaattaaatgtggagaagtggagtgtccggggttcgaaccc--gcccctgcataaattatgcaatgtccctaccaactgagctaagctc 44764727  T
Q  356 acggggac 363  Q
    ||| ||||    
T  44764726 acgaggac 44764719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 258 - 363
Target Start/End: Complemental strand, 20919714 - 20919607
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||||||||||| | || ||||||||||||  |||| |||||||||| ||||||| ||    
T  20919714 tagagctcacataattaaatgtggagaagtggggtgtccggggttcgaaccccggccccagcataaattatgcaatgtccctaccaactgagctaagctc 20919615  T
Q  356 acggggac 363  Q
    ||||||||    
T  20919614 acggggac 20919607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 352
Target Start/End: Complemental strand, 3596352 - 3596258
Alignment:
Q  260 gagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtc-ctaccaacttagctaag 352  Q
    ||||||||| ||| | |||||||||| ||||||||||||  ||||||||||||| |||||||||||||||  ||||| || |||||| |||||||    
T  3596352 gagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcataaattatgcaatgtctctgccaactaagctaag 3596258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 364
Target Start/End: Original strand, 11949980 - 11950070
Alignment:
Q  276 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtc-ctaccaacttagctaagttcacggggacg 364  Q
    |||||||||| ||||||||||||  |||||||| || | |||||||||||| ||| || || ||||||||||||||||| |||||||||||    
T  11949980 atgtggagaagtggggtgtccggggttcgaacctcgtcccctgcataaattgtgtaatttctctaccaacttagctaagctcacggggacg 11950070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 363
Target Start/End: Original strand, 4858685 - 4858774
Alignment:
Q  275 tatgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggggac 363  Q
    ||||||||||| ||||||| |  ||||||||||||  | |||||||||||||||  |||| |||||||||| || |||||||||||||||    
T  4858685 tatgtggagaagtggggtgccgagattcgaaccccagcccctgcataaattatgcaatgtccctaccaactaagttaagttcacggggac 4858774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 23405271 - 23405193
Alignment:
Q  287 tggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggggac 363  Q
    |||||||||| || ||||||||||||| |||||||| ||||||  |||| |||||||||| ||||||| ||||||||||    
T  23405271 tggggtgtccagggttcgaaccccgacccctgcatatattatgcaatgtccctaccaactgagctaagctcacggggac 23405193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 344
Target Start/End: Complemental strand, 44558088 - 44558019
Alignment:
Q  276 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcctaccaact 344  Q
    |||||||||| ||||||||||||  ||||||||||  | |||||||||||||||  ||||||||||||||    
T  44558088 atgtggagaagtggggtgtccggggttcgaaccccagcccctgcataaattatgcaatgtcctaccaact 44558019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 363
Target Start/End: Complemental strand, 1964454 - 1964350
Alignment:
Q  261 agctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacg 358  Q
    |||||||| ||| | || ||||||| ||||||||||||  || |||||||| | |||||||||||||||  |||||| | |||| | |||||||||||||    
T  1964454 agctcacacaattaaatatggagaagtggggtgtccggggtttgaaccccggcccctgcataaattatgcaatgtccctgccaattaagctaagttcacg 1964355  T
Q  359 gggac 363  Q
    |||||    
T  1964354 gggac 1964350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 364
Target Start/End: Original strand, 13242702 - 13242805
Alignment:
Q  263 ctcacaaaatcatatgtggagaactggggtgtccg-gattcgaaccccgactcctgcataaattatgtcatgtc-ctaccaacttagctaagttcacggg 360  Q
    |||||| ||| | |||||||||| || |||||||| | ||||||||||||| |||||||||||||||  || || ||| ||||| | ||||||||||| |    
T  13242702 ctcacacaattaaatgtggagaagtgaggtgtccgaggttcgaaccccgacccctgcataaattatgcaatatctctatcaactgatctaagttcacgag 13242801  T
Q  361 gacg 364  Q
    ||||    
T  13242802 gacg 13242805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 362
Target Start/End: Complemental strand, 17034820 - 17034733
Alignment:
Q  277 tgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 362  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||||| | ||||  || | |||||||| | ||||||| |||||||||    
T  17034820 tgtggagaagtggagtgtccgggattcgaaccccgactcctgcatataatatgcaatatccctaccaattgagctaagctcacgggga 17034733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 22653629 - 22653716
Alignment:
Q  277 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 362  Q
    ||||||||| ||| ||||||||  |||||||||||||||||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  22653629 tgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 22653716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 357
Target Start/End: Original strand, 23919461 - 23919544
Alignment:
Q  276 atgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcac 357  Q
    |||||||||| ||||||||| || |||||||||||||| ||| |||| ||||||  |||| |||||||||| ||||||| ||||    
T  23919461 atgtggagaaatggggtgtctgggattcgaaccccgacccctccatatattatgcaatgtccctaccaactgagctaagctcac 23919544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 364
Target Start/End: Original strand, 2145719 - 2145809
Alignment:
Q  276 atgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacggggacg 364  Q
    |||||||||| ||||||||| || |||| |||| |  | |||||||||||||||  |||||| |||||||| | |||||||||||||||||    
T  2145719 atgtggagaagtggggtgtcagggattcaaacctctgcccctgcataaattatgcaatgtccctaccaactgaactaagttcacggggacg 2145809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 11050744 - 11050829
Alignment:
Q  279 tggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 362  Q
    ||||||| ||||||||||||| ||||||||||  | |||||||| | ||||| || | |||||||||| ||||||| |||||||||    
T  11050744 tggagaagtggggtgtccggagttcgaaccccagcccctgcatataatatgtaatatccctaccaactgagctaagctcacgggga 11050829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 17089328 - 17089283
Alignment:
Q  277 tgtggagaactggggtgtccgg-attcgaaccccgactcctgcata 321  Q
    ||||||||| ||| |||||||| |||||||||||||||||||||||    
T  17089328 tgtggagaagtggagtgtccgggattcgaaccccgactcctgcata 17089283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 3446816 - 3446728
Alignment:
Q  276 atgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 362  Q
    |||||||||| |||||||||| || |||||||| || |||||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  3446816 atgtggagaagtggggtgtccggggttcgaacctcggctcctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 3446728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 258 - 359
Target Start/End: Complemental strand, 11333768 - 11333665
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||||||| ||| | |||||||||||||||  |||| |||||||||| ||||||||||    
T  11333768 tagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctaccaactgagctaagttc 11333669  T
Q  356 acgg 359  Q
    ||||    
T  11333668 acgg 11333665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 258 - 359
Target Start/End: Complemental strand, 11491789 - 11491686
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||||||| ||| | |||||||||||||||  |||| |||||||||| ||||||||||    
T  11491789 tagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctaccaactgagctaagttc 11491690  T
Q  356 acgg 359  Q
    ||||    
T  11491689 acgg 11491686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 361
Target Start/End: Original strand, 36666542 - 36666647
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    ||||||||||| ||| |  ||||||||| |||||||||| || ||||||||||| | |||||||||||||||  |||| |||||||||| ||||||| ||    
T  36666542 tagagctcacacaattaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaactgagctaagctc 36666641  T
Q  356 acgggg 361  Q
    ||||||    
T  36666642 acgggg 36666647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 363
Target Start/End: Original strand, 31124604 - 31124711
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttc 355  Q
    ||||||||||| ||| | |||||||||| |||||| |||||| ||||||||||| | |||||||||||||||  |||||| | |||||| ||||||| ||    
T  31124604 tagagctcacacaattaaatgtggagaagtggggtatccggagttcgaaccccggcccctgcataaattatgcaatgtccttgccaactgagctaagctc 31124703  T
Q  356 acggggac 363  Q
    | ||||||    
T  31124704 atggggac 31124711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 45416143 - 45416215
Alignment:
Q  257 ttagagctcacaaaatcatatgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatg 328  Q
    |||||| ||||| ||| | |||||||||| |||||||||||| |||||||||||| | |||||||||||||||    
T  45416143 ttagagttcacacaattaaatgtggagaagtggggtgtccgggattcgaaccccggcccctgcataaattatg 45416215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 363
Target Start/End: Original strand, 47469038 - 47469146
Alignment:
Q  257 ttagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagtt 354  Q
    |||||||||||| ||| | |||||||||| |||||||||| || |||||||| |  | |||||||||||||||  |||| ||| |||||| ||||||| |    
T  47469038 ttagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaacctcagcccctgcataaattatgcaatgtccctgccaactgagctaagct 47469137  T
Q  355 cacggggac 363  Q
    |||||||||    
T  47469138 cacggggac 47469146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 23991230 - 23991301
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 328  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||||||||||| | |||||||||||||||    
T  23991230 tagagctcacacaattaaatgtggagaagtggggtgtccagggttcgaaccccggcccctgcataaattatg 23991301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 363
Target Start/End: Complemental strand, 8741559 - 8741470
Alignment:
Q  276 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggggac 363  Q
    |||||||||| ||||||||| ||  ||||||||||  | |||||||||||||||| |||| |||||||||| | ||||| ||||||||||    
T  8741559 atgtggagaagtggggtgtcaggggttcgaacccctgcccctgcataaattatgtaatgtccctaccaactgaactaagctcacggggac 8741470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 359
Target Start/End: Original strand, 43021606 - 43021691
Alignment:
Q  276 atgtggagaactggggtgtccg-gattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgg 359  Q
    |||||||||| ||||||||||| | ||||||||||||| |||||||||| ||||   ||| |||||||||| ||||||| ||||||    
T  43021606 atgtggagaagtggggtgtccgaggttcgaaccccgacccctgcataaaatatgcattgtccctaccaactaagctaagctcacgg 43021691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 6130018 - 6130105
Alignment:
Q  277 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 362  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||| | ||||  || | |||||||||| ||||| | |||||||||    
T  6130018 tgtggagaagtggagtgtccggagttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctacgctcacgggga 6130105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 363
Target Start/End: Original strand, 19564119 - 19564225
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccg-gattcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttc 355  Q
    ||||| ||||| ||| | |||||||||| ||||||||||| | ||||||||||| | |||||||||||||||  |||||| | |||||| ||||||  ||    
T  19564119 tagagttcacacaattaaatgtggagaagtggggtgtccgaggttcgaaccccggc-cctgcataaattatgcaatgtccttgccaactgagctaaactc 19564217  T
Q  356 acggggac 363  Q
    ||||||||    
T  19564218 acggggac 19564225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 362
Target Start/End: Complemental strand, 32594336 - 32594249
Alignment:
Q  277 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 362  Q
    ||||||||| ||| ||||||||  |||||||||||||||||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  32594336 tgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 32594249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 42490395 - 42490482
Alignment:
Q  277 tgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 362  Q
    ||||||||| |||||||||| || ||||||||||||| |||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  42490395 tgtggagaagtggggtgtccggggttcgaaccccgacccctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 42490482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 45180506 - 45180585
Alignment:
Q  276 atgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgtcctaccaacttagctaagttc 355  Q
    |||| ||||| |||| |||| || |||||||||| || |||||||||||||||| || | ||||||| | ||||||||||    
T  45180506 atgtagagaagtgggttgtcagggttcgaacccctacccctgcataaattatgtaatatactaccaattgagctaagttc 45180585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 50119076 - 50119005
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 328  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||||||| ||||| |||||||||| ||||    
T  50119076 tagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaactccgacccctgcataaaatatg 50119005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 363
Target Start/End: Complemental strand, 11860141 - 11860039
Alignment:
Q  263 ctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatg-tcctaccaacttagctaagttcacggg 360  Q
    |||||| ||| | |||||||||| |||||||||| || ||||||||||||| |||  ||||||||||  ||| | || |||||| ||||||| |||||||    
T  11860141 ctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccgacccctatataaattatgcaatgtttctgccaactgagctaagctcacggg 11860042  T
Q  361 gac 363  Q
    |||    
T  11860041 gac 11860039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 363
Target Start/End: Complemental strand, 29204731 - 29204642
Alignment:
Q  276 atgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggggac 363  Q
    |||||||||| |||||| || || ||||||||| || ||| |||||||||||||  |||| |||||||||| ||||||| ||||| ||||    
T  29204731 atgtggagaagtggggtatctgggattcgaacctcggctcttgcataaattatgcaatgtccctaccaactgagctaagctcacgaggac 29204642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 336
Target Start/End: Original strand, 49503134 - 49503195
Alignment:
Q  276 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc 336  Q
    ||||| |||||||||||||||||  ||||||| ||| | |||||||||||||||| ||||||    
T  49503134 atgtgaagaactggggtgtccggcgttcgaactccggcccctgcataaattatgtaatgtcc 49503195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 3694901 - 3694945
Alignment:
Q  277 tgtggagaactggggtgtccggattcgaaccccgactcctgcata 321  Q
    ||||||||| ||| |||||||||||||||||||| ||||| ||||    
T  3694901 tgtggagaagtggagtgtccggattcgaaccccggctcctacata 3694945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 8984491 - 8984535
Alignment:
Q  277 tgtggagaactggggtgtccggattcgaaccccgactcctgcata 321  Q
    ||||||||| ||| |||||||| ||||||||||| ||||||||||    
T  8984491 tgtggagaagtggagtgtccgggttcgaaccccggctcctgcata 8984535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 363
Target Start/End: Original strand, 18607778 - 18607882
Alignment:
Q  261 agctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacg 358  Q
    |||||||| ||| | |||| ||||| |||||||| |||  ||||||||||  | |||||||||||||||  |||| |||||||||| ||||||| |||||    
T  18607778 agctcacacaattaaatgtagagaagtggggtgttcggggttcgaaccccagcccctgcataaattatgcaatgtccctaccaactcagctaagctcacg 18607877  T
Q  359 gggac 363  Q
     ||||    
T  18607878 aggac 18607882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 364
Target Start/End: Original strand, 30245990 - 30246098
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttc 355  Q
    ||||||||| | ||| | |||||||||| |||||| | |||  |||||| |||||| ||||||| |||||||  |||||| |||||| | ||||||| ||    
T  30245990 tagagctcatacaattaaatgtggagaagtggggtattcggggttcgaatcccgacccctgcatcaattatgcaatgtccctaccaaatgagctaagctc 30246089  T
Q  356 acggggacg 364  Q
    |||||||||    
T  30246090 acggggacg 30246098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 34557289 - 34557357
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccg-gattcgaaccccgactcctgcataaatt 325  Q
    ||||||||||| | | | |||||||||| | ||||||||  ||||||||||||||| ||||||||||||    
T  34557289 tagagctcacacatttaaatgtggagaagtagggtgtccaagattcgaaccccgacccctgcataaatt 34557357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 39670794 - 39670862
Alignment:
Q  257 ttagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaat 324  Q
    |||||||||||| ||| | |||||||||| |||| |||| ||| |||||||||| || |||||||||||    
T  39670794 ttagagctcacacaattaaatgtggagaagtgggatgtctggagttcgaaccccaacccctgcataaat 39670862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 50537052 - 50537004
Alignment:
Q  274 atatgtggagaactggggtgtccg-gattcgaaccccgactcctgcata 321  Q
    |||||||||||| ||||||||||| | |||||||||| |||||||||||    
T  50537052 atatgtggagaagtggggtgtccgaggttcgaaccccaactcctgcata 50537004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 361
Target Start/End: Complemental strand, 51890901 - 51890796
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||||||||||| | |||||||||||||||  |||| ||| |||||| ||||||| ||    
T  51890901 tagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctgccaactgagctaagctc 51890802  T
Q  356 acgggg 361  Q
    ||||||    
T  51890801 acgggg 51890796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 357
Target Start/End: Complemental strand, 29406459 - 29406360
Alignment:
Q  260 gagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcac 357  Q
    ||||||||| ||| | |||||||||| |||| |||||||| ||||||||||||| |||||||||||||||  |||| |||||||| | ||||||| ||||    
T  29406459 gagctcacacaattaaatgtggagaagtgggttgtccggagttcgaaccccgacccctgcataaattatgcaatgtccctaccaattgagctaagctcac 29406360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 2629683 - 2629612
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatg 328  Q
    ||||||||||| ||| | |||||||||| |||||||| |||  ||||||||||||| |||||||||||||||    
T  2629683 tagagctcacacaattaaatgtggagaagtggggtgttcggggttcgaaccccgacccctgcataaattatg 2629612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 363
Target Start/End: Complemental strand, 32293212 - 32293105
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttc 355  Q
    ||||||||||| ||| | |||||||||| |||  ||||| || ||| ||||||||| |||||||||||||||  |||||| || ||||| ||||||| ||    
T  32293212 tagagctcacataattaaatgtggagaagtggaatgtccagggttctaaccccgacccctgcataaattatgcaatgtccttatcaactgagctaagctc 32293113  T
Q  356 acggggac 363  Q
    ||||||||    
T  32293112 acggggac 32293105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 13088995 - 13088942
Alignment:
Q  276 atgtggagaactggggtgtccg-gattcgaaccccgactcctgcataaattatg 328  Q
    ||||||| || ||||||||||| ||||||||||||||| |||||||||||||||    
T  13088995 atgtggaaaagtggggtgtccgagattcgaaccccgacccctgcataaattatg 13088942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 325
Target Start/End: Original strand, 38848085 - 38848154
Alignment:
Q  257 ttagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaatt 325  Q
    |||||||||||| | | | |||||||||| |||||||||| || ||||||||||||| ||||||||||||    
T  38848085 ttagagctcacacatttaaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcataaatt 38848154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 12625933 - 12625862
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatg 328  Q
    ||||| ||||| ||| | |||||||||| ||||||||||||  ||||||| ||||| |||||||||||||||    
T  12625933 tagagttcacacaattaaatgtggagaagtggggtgtccggtgttcgaactccgacccctgcataaattatg 12625862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 363
Target Start/End: Original strand, 23924838 - 23924945
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    ||||||||||| ||  | |||||||||| ||  ||||||||  ||||||||||| | |||||||||||||||  |||| |||||||| | || |||||||    
T  23924838 tagagctcacacaaataaatgtggagaagtgaagtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaattgagttaagttc 23924937  T
Q  356 acggggac 363  Q
    ||||||||    
T  23924938 acggggac 23924945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 42664085 - 42664014
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 328  Q
    ||||||||||| ||| | |||||||||| |||||||||| ||||||||||||| ||  |||| |||||||||    
T  42664085 tagagctcacacaattaaatgtggagaagtggggtgtccaggattcgaaccccaacctctgcgtaaattatg 42664014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 46791177 - 46791244
Alignment:
Q  261 agctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattat 327  Q
    |||||||| ||| | ||||| |||| ||||||||||||| ||||||||||  ||||||||||||||||    
T  46791177 agctcacagaattaaatgtgaagaagtggggtgtccggagttcgaaccccatctcctgcataaattat 46791244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 360
Target Start/End: Original strand, 45139865 - 45139951
Alignment:
Q  276 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggg 360  Q
    |||||||||| || |||||||||  ||||||||||| | ||||||||||||||   |||| |||||||||| ||||||| |||||||    
T  45139865 atgtggagaagtgaggtgtccggggttcgaaccccggcccctgcataaattatacaatgtccctaccaactgagctaagctcacggg 45139951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 328
Target Start/End: Original strand, 11294822 - 11294875
Alignment:
Q  276 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatg 328  Q
    |||||||||| ||||||||||||  ||||||||||| | |||||||||||||||    
T  11294822 atgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatg 11294875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 361
Target Start/End: Complemental strand, 42002410 - 42002305
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccg-gattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    ||||||||||| ||| | |||||||||| ||||||||| | | ||| |||| || | ||| |||||||||||  |||| |||||||||| ||||||| ||    
T  42002410 tagagctcacacaattaaatgtggagaagtggggtgtctgaggttcaaaccacggcccctacataaattatgcaatgtccctaccaactaagctaagctc 42002311  T
Q  356 acgggg 361  Q
    ||||||    
T  42002310 acgggg 42002305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 360
Target Start/End: Complemental strand, 43978092 - 43978008
Alignment:
Q  277 tgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggg 360  Q
    ||||||||| ||| |||| ||| ||||||||||||| |||||||| | ||||  || | |||||||||| ||||||| |||||||    
T  43978092 tgtggagaagtggagtgtacgggttcgaaccccgacccctgcatataatatgcaatatccctaccaactgagctaagctcacggg 43978008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 364
Target Start/End: Complemental strand, 481110 - 481007
Alignment:
Q  263 ctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacggg 360  Q
    |||||| ||| | |||||||||| ||||||||||||  |||||||| || | |||||||||||||||  |||||| |||||||| ||||||| |||||||    
T  481110 ctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccgcggcccctgcataaattatgcaatgtccctaccaactgagctaagctcacggg 481011  T
Q  361 gacg 364  Q
    ||||    
T  481010 gacg 481007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 363
Target Start/End: Complemental strand, 12770472 - 12770365
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||||||||||| | |||||||||||||||  |||| |||| ||||| ||||||| ||    
T  12770472 tagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctatcaactgagctaagctc 12770373  T
Q  356 acggggac 363  Q
    | ||||||    
T  12770372 atggggac 12770365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 17027866 - 17027952
Alignment:
Q  277 tgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 362  Q
    ||||||||| |||||||||||| ||||||||||| |||| ||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  17027866 tgtggagaagtggggtgtccgggttcgaaccccggctccggcatataatatgcaatatccctaccaactgagctaagctcacgggga 17027952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 17558302 - 17558388
Alignment:
Q  277 tgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 362  Q
    ||||||||| |||||||||||| ||||||||||| |||| ||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  17558302 tgtggagaagtggggtgtccgggttcgaaccccggctccggcatataatatgcaatatccctaccaactgagctaagctcacgggga 17558388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 42877117 - 42877031
Alignment:
Q  278 gtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggggac 363  Q
    |||||||| |||||||| ||| |||||||| || | |||||||||||||||  |||| |||||||| | ||||||| ||||||||||    
T  42877117 gtggagaagtggggtgttcgggttcgaaccacggcccctgcataaattatgcaatgtccctaccaattgagctaagctcacggggac 42877031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 364
Target Start/End: Original strand, 30676269 - 30676378
Alignment:
Q  257 ttagagctcacaaaatcatatgtggagaactggggtg-tccggattcgaaccccgactcctgcataaattatgtcatgtc-ctaccaacttagctaagtt 354  Q
    |||||||||||| ||| | |||||||||| ||||||| |  |||||||||||| |||  || ||||||||||   ||||| ||||||||| || ||||||    
T  30676269 ttagagctcacacaattaaatgtggagaaatggggtgtttgggattcgaaccctgacctctacataaattatacaatgtctctaccaactgagttaagtt 30676368  T
Q  355 cacggggacg 364  Q
    ||||||||||    
T  30676369 cacggggacg 30676378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 362
Target Start/End: Original strand, 14876566 - 14876674
Alignment:
Q  257 ttagagctcacaaaatcatat-gtggagaactggggtgtccg-gattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagt 353  Q
    |||||||||||| ||| |||| |||||||| ||| ||||||| | ||||||||||| |||||||||| | ||||  || | |||||||||| |||||||     
T  14876566 ttagagctcacacaattatattgtggagaagtggagtgtccgaggttcgaaccccggctcctgcatataatatgcaatttccctaccaactgagctaagc 14876665  T
Q  354 tcacgggga 362  Q
    |||||||||    
T  14876666 tcacgggga 14876674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 362
Target Start/End: Complemental strand, 17698607 - 17698520
Alignment:
Q  277 tgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 362  Q
    ||||||||| ||| |||||||| |||||||||||| |||||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  17698607 tgtggagaagtggagtgtccgggattcgaaccccggctcctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 17698520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 25824868 - 25824939
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtc-cggattcgaaccccgactcctgcataaattatg 328  Q
    ||||||||||| ||| |||||| ||||| |||||||||  || ||||||||||||| | |||||||||||||    
T  25824868 tagagctcacacaattatatgttgagaagtggggtgtctggggttcgaaccccgacccttgcataaattatg 25824939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 43847039 - 43846968
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 328  Q
    ||||||||||| ||| | |||||||||| |||||||||| || |||||||  |||| |||||||||||||||    
T  43847039 tagagctcacacaattaaatgtggagaagtggggtgtccagggttcgaacatcgacccctgcataaattatg 43846968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 357
Target Start/End: Original strand, 25890389 - 25890471
Alignment:
Q  277 tgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcac 357  Q
    ||||||||| |||||||||| || ||||||||||| | | |||||||||||||  |||| |||||||||| ||||||| ||||    
T  25890389 tgtggagaagtggggtgtccggggttcgaaccccggcccttgcataaattatgcaatgtccctaccaactaagctaagctcac 25890471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 357
Target Start/End: Original strand, 27077082 - 27077164
Alignment:
Q  277 tgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcac 357  Q
    ||||||||| |||||||||||| |||||||||||||| |||||||| | ||||  || | |||||||||| ||||||| ||||    
T  27077082 tgtggagaagtggggtgtccgggattcgaaccccgacccctgcatataatatgcaatatccctaccaactgagctaagctcac 27077164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 363
Target Start/End: Original strand, 13059161 - 13059250
Alignment:
Q  276 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggggac 363  Q
    |||||||||| ||||||||| ||  ||||||||||  | |||||||||||||||   ||| |||||||||| ||||||| ||||||||||    
T  13059161 atgtggagaagtggggtgtcaggggttcgaacccctgcccctgcataaattatgcattgtccctaccaactgagctaagctcacggggac 13059250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 24517356 - 24517295
Alignment:
Q  300 ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacggg 360  Q
    ||||||||||  ||||||||||||| |||  |||||| |||||||| |||||||||||||||    
T  24517356 ttcgaacccctgctcctgcataaatcatgcaatgtccctaccaactgagctaagttcacggg 24517295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 364
Target Start/End: Complemental strand, 11231524 - 11231416
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    ||||||||||| ||| |  ||| ||||| ||||||||||||  ||||||||||| | |||||||||||||||  |||| |||  ||||| ||||||| ||    
T  11231524 tagagctcacacaattaattgtcgagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctttcaactgagctaagctc 11231425  T
Q  356 acggggacg 364  Q
    | |||||||    
T  11231424 atggggacg 11231416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 22274577 - 22274641
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcata 321  Q
    ||||||||||| ||| |  ||||||||| |||||||||| || ||||||||||| ||||||||||    
T  22274577 tagagctcacacaattaattgtggagaagtggggtgtccggggttcgaaccccggctcctgcata 22274641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 32620037 - 32620108
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 328  Q
    ||||||||| | ||| | |||||||||| |||||||||| ||||||||||||| ||||||||||||||||||    
T  32620037 tagagctcatacaattaaatgtggagaaatggggtgtccaggattcgaaccccaactcctgcataaattatg 32620108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 363
Target Start/End: Original strand, 20568294 - 20568358
Alignment:
Q  300 ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacggggac 363  Q
    ||||||||||||| |||||||| ||||||  |||||| |||||||| ||||||| ||||||||||    
T  20568294 ttcgaaccccgacccctgcatatattatgcaatgtccttaccaactgagctaagctcacggggac 20568358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 362
Target Start/End: Complemental strand, 15091533 - 15091446
Alignment:
Q  277 tgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 362  Q
    ||||||||| |||||||||| |||||||||||||| | |||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  15091533 tgtggagaagtggggtgtccgggattcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 15091446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 360
Target Start/End: Complemental strand, 16801857 - 16801786
Alignment:
Q  291 gtgtccgga-ttcgaaccccgactcctgcata-aattatgtcatgtcctaccaacttagctaagttcacggg 360  Q
    ||||||||| |||||||||||||||||||||| ||| ||||  ||||||||||||| ||||| | |||||||    
T  16801857 gtgtccggaattcgaaccccgactcctgcatataataatgttttgtcctaccaactgagctatgctcacggg 16801786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 24319117 - 24319011
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    ||||||||||| ||| |  ||||||||| ||| ||||||||  ||||||||||| | |||||||||||||||  |||| |||||||||| | ||||  ||    
T  24319117 tagagctcacacaattaattgtggagaagtggagtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaactgaactaaactc 24319018  T
Q  356 acgggga 362  Q
    |||||||    
T  24319017 acgggga 24319011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 32788820 - 32788890
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattat 327  Q
    ||||||||| | ||| | ||||| |||| ||||||||||||| |||||||||| || ||||||||||||||    
T  32788820 tagagctcatacaattaaatgtgtagaagtggggtgtccggagttcgaaccccaacccctgcataaattat 32788890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 334
Target Start/End: Complemental strand, 8443643 - 8443566
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt 334  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||| ||||  ||| |||||||||||||||| ||||    
T  8443643 tagagctcacagaattaaatgtggagaagtggggtgtccggggttctaaccatgacccctgcataaattatgtaatgt 8443566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 334
Target Start/End: Complemental strand, 8452447 - 8452370
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt 334  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||| ||||  ||| |||||||||||||||| ||||    
T  8452447 tagagctcacagaattaaatgtggagaagtggggtgtccggggttctaaccatgacccctgcataaattatgtaatgt 8452370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 359
Target Start/End: Original strand, 23610331 - 23610388
Alignment:
Q  303 gaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgg 359  Q
    |||||||||| |||||||||||||||  |||| |||||||||| ||||||| ||||||    
T  23610331 gaaccccgacccctgcataaattatgcaatgtccctaccaactgagctaagctcacgg 23610388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 34268343 - 34268279
Alignment:
Q  300 ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggggac 363  Q
    ||||||||| ||| |||||||||||||||  |||| |||||||||  ||||||| ||||||||||    
T  34268343 ttcgaaccctgacccctgcataaattatgcaatgtccctaccaacggagctaagctcacggggac 34268279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 363
Target Start/End: Complemental strand, 21898 - 21791
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    |||| |||||||||| | |||||||||| |||||||||| |||||||| ||||| | ||||||||||||||   |||| |||| ||||| |||||| |||    
T  21898 tagaactcacaaaattaaatgtggagaattggggtgtccgggattcgatccccggcccctgcataaattatacaatgtgcctatcaactgagctaaattc 21799  T
Q  356 acggggac 363  Q
    | ||||||    
T  21798 atggggac 21791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 352
Target Start/End: Original strand, 28789 - 28883
Alignment:
Q  260 gagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaag 352  Q
    ||||||||| ||| | |||||||||| |||||||||| || ||||||||||| | |||||||||| ||||| |||| |||| ||||| |||||||    
T  28789 gagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaagtatgtaatgtccctatcaactgagctaag 28883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 359
Target Start/End: Complemental strand, 15109 - 15006
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtg-tccggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    ||||||||||| ||| | |||||||||| ||||||| |  || ||||||||  ||| |||||||||||||||  |||| |||||||||| ||||||| ||    
T  15109 tagagctcacataattaaatgtggagaagtggggtgtttggggttcgaaccatgacccctgcataaattatgcaatgtccctaccaactgagctaagctc 15010  T
Q  356 acgg 359  Q
    ||||    
T  15009 acgg 15006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 364
Target Start/End: Original strand, 2928 - 3036
Alignment:
Q  258 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 355  Q
    ||||||||||| ||| |  ||| ||||| ||||||||||||  ||||||||||| | |||||||||||||||  |||| |||  ||||| ||||||| ||    
T  2928 tagagctcacacaattaattgtcgagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctttcaactgagctaagctc 3027  T
Q  356 acggggacg 364  Q
    | |||||||    
T  3028 atggggacg 3036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University