View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9895_high_4 (Length: 383)
Name: NF9895_high_4
Description: NF9895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9895_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 209 - 371
Target Start/End: Original strand, 25005772 - 25005934
Alignment:
| Q |
209 |
tgtattgtaatctcaattattacaagatagttattcaagtttatcatcttgtgtatcgaagacatgaaaataagtgtctgatgaatcaaatgtttatatc |
308 |
Q |
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| T |
25005772 |
tgtattgtaatctcaattattacaagatagttattcaagtttagcatcttgtgtatcgaagacatgaaaataagtgtctgatgaatcaaatgtttatatc |
25005871 |
T |
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| Q |
309 |
tcaagctcatcatctatatcaagtgctagagttttctattccaaaactgagtctctgctcctc |
371 |
Q |
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| T |
25005872 |
tcaagctcatcatctatatcaagtggtagagttttctattccaaaactgagtctttgttcctc |
25005934 |
T |
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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 324
Target Start/End: Complemental strand, 26417871 - 26417792
Alignment:
| Q |
245 |
aagtttatcatcttgtgtatcgaagacatgaaaataagtgtctgatgaatcaaatgtttatatctcaagctcatcatcta |
324 |
Q |
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||||||||| ||||||||||| ||||||| |||| | |||||| || |||||||||||| |||||| ||||||||||| |
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| T |
26417871 |
aagtttatcctcttgtgtatcaaagacattaaaaaatgtgtctaataggtcaaatgtttatctctcaacctcatcatcta |
26417792 |
T |
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