View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9895_high_5 (Length: 376)
Name: NF9895_high_5
Description: NF9895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9895_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 17496990 - 17497362
Alignment:
| Q |
1 |
cattaactaatgccctaaaaacacttgtaagcatgaccacattcaatttaaaactttannnnnnnnattttcagcttttgcatgaccaaacatttatcat |
100 |
Q |
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| T |
17496990 |
cattaactaatgccctaaaaacactcctaagcataaccacattcaatttaaaactttattttttt-attttcagctttttcaagaccaaacatttatcat |
17497088 |
T |
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| Q |
101 |
tggtaagttnnnnnnnnnnnncagaaaggtcacgggtaaacccttcaccgcaagggtagccaatgaaaggagacacataccgcaccaaagcaaagaccag |
200 |
Q |
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| T |
17497089 |
tggtaagttaaaaacaaaaa-cagaaaggtcacgggtaaacccttcaccgcaagggtagccaatgaaaggagacacataccgcaccaaagcaaagaccag |
17497187 |
T |
|
| Q |
201 |
ggaccaatcctttatgaaagaaaccaaagttaaggagagcgatggcaggaacagcattgattattgcaaaaacatcattcaactcgaaagctccttctct |
300 |
Q |
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| T |
17497188 |
ggaccaatcctttgtgaaagaaaccaaagttaaggagagcgatagcaggaacagcattgattattgcaaaaacatcattcaactcgaaagctccttctct |
17497287 |
T |
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| Q |
301 |
tgctctatgatgggactgca-----aattcaagcaagcaattcaatttcatattttgtttctttgtctctgcttc |
370 |
Q |
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| T |
17497288 |
tgctctatgatgggactgcaaattcaattcaagcaaacaattcaatttcattttttgtttctttatctttgcttc |
17497362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 321
Target Start/End: Complemental strand, 45087487 - 45087402
Alignment:
| Q |
236 |
agagcgatggcaggaacagcattgattattgcaaaaacatcattcaactcgaaagctccttctcttgctctatgatgggactgcaa |
321 |
Q |
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| T |
45087487 |
agagcaattgcaggaacagcgttgattattgcaaaaacatcattaagctcaaatgctccttctcttggtcgatgatgtgactgcaa |
45087402 |
T |
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