View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9895_low_1 (Length: 779)
Name: NF9895_low_1
Description: NF9895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9895_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 664; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 10 - 760
Target Start/End: Complemental strand, 3454499 - 3453745
Alignment:
| Q |
10 |
tgttattttgcagcaatgctgtcaaattcacacatcaaggcaaagttggtataaacctttatgtggttccggagccagcatttgccaaagaagaagaata |
109 |
Q |
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| T |
3454499 |
tgttattttgcagcaatgctgtcaagtttacacatcaaggcaaagttggtataaacctttatgttgttccagaaccagcatttgccaaagaagaagaatc |
3454400 |
T |
|
| Q |
110 |
tcaccaaaaggtcacagaagaccagtcaactatttcagcaaatggattgaaggaagataaacatacaccatcaccaagaagtatgagatgtgatcaaaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3454399 |
tcaccaaaaggtcacagaagaccagtcaactatttcagcaaatggattgaaggaagataaacatacaccatcaccaagaagtatgagatgtgatcaaaat |
3454300 |
T |
|
| Q |
210 |
cttattgatgatagaaaacacgctgaccatcctatccagaatcatgcgtttagcaatgaatgtagatcttcagttaacagtgaatgctcaatgaatg--- |
306 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3454299 |
cttatcgatgatagaaaacacgctgaccatcctatccagaatcatgcgtttagcaatgaatgcagatcttcagttaacagtgaatgctcaatgaatgatg |
3454200 |
T |
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| Q |
307 |
atgacactgaagaacaaactcattcaattgaaacaacagtgtggatacgttgtgatgtgtacgacacaggaattggcataccaggtatgtgttagtaaca |
406 |
Q |
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| T |
3454199 |
atgatactgaagaacaaactcattcaattgaaacaacagtgtggatacgttgtgatgtgtacgacacaggaattggcataccaggtatgtgttagtaaca |
3454100 |
T |
|
| Q |
407 |
gcgttc-cttcttttgttttagaattgattatattttgaattcatatagtgaaatttgatttttgtttagcaagtgtacttaannnnnnnctttctcatg |
505 |
Q |
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| T |
3454099 |
gcgttcttttcttttgttttagaattgattatattttgtattcatatagtgaaatttgatttttgtttagcaagtgtacttaatttttttctttttcatg |
3454000 |
T |
|
| Q |
506 |
ttgtaatgtcacacagaaaaggctatacctactttatttagaaggtacatgcaagttagtgcagaccatgctcgaaaatatggaggcacaggtctaggac |
605 |
Q |
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| T |
3453999 |
ttgtaatgtcacacagaaaaggctatacctactttatttagaaggtacatgcaagttagtgcagaccatgctcgaaaatatggaggcacaggtctaggac |
3453900 |
T |
|
| Q |
606 |
tagcaatatgtaaacaactggtaaactcttccgccaaagcattttcatttgacaaattattctgccttaatcttttgtttcctttagttataaatttaat |
705 |
Q |
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| T |
3453899 |
tagcaatatgtaaacaactggtaaactcttccgccaaagcattttcatttgacaaattattctgccttaatcttttgtttcctttagttataaatttaat |
3453800 |
T |
|
| Q |
706 |
tcatatgcactgacgtgtaaagagtttttagagaaaccaattaacgaggataact |
760 |
Q |
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| T |
3453799 |
tcatatgcactgacgtgtaaagagtttttagagaaaccaattaacgaggataact |
3453745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 518 - 630
Target Start/End: Original strand, 48696644 - 48696756
Alignment:
| Q |
518 |
acagaaaaggctatacctactttatttagaaggtacatgcaagttagtgcagaccatgctcgaaaatatggaggcacaggtctaggactagcaatatgta |
617 |
Q |
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|||||||| || |||| || |||||| | ||||||||||||||| |||| ||| || |||||||| ||||| || ||||| ||||||||||||||||| | |
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| T |
48696644 |
acagaaaatgcaatacatagtttattcaaaaggtacatgcaagtcagtgtagatcacgctcgaaagtatggtgggacagggctaggactagcaatatgca |
48696743 |
T |
|
| Q |
618 |
aacaactggtaaa |
630 |
Q |
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| T |
48696744 |
aacaactggtaaa |
48696756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 282 - 394
Target Start/End: Original strand, 48696377 - 48696489
Alignment:
| Q |
282 |
gttaacagtgaatgctcaatgaatgatgacactgaagaacaaactcattcaattgaaacaacagtgtggatacgttgtgatgtgtacgacacaggaattg |
381 |
Q |
| |
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||||| ||||||||||| ||||| | ||||| || || ||| ||| |||| ||||||||||||||||||| |||||||||| || || ||||| |||| |
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| T |
48696377 |
gttaagagtgaatgctcgatgaacggagacacagaggatcaacatcactcaaatgaaacaacagtgtggataggttgtgatgtatatgatacaggcattg |
48696476 |
T |
|
| Q |
382 |
gcataccaggtat |
394 |
Q |
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| T |
48696477 |
gaataccaggtat |
48696489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 48696193 - 48696252
Alignment:
| Q |
14 |
attttgcagcaatgctgtcaaattcacacatcaaggcaaagttggtataaacctttatgt |
73 |
Q |
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||||||||||||||| ||||||| ||| || |||||||||| || |||||||||||||| |
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| T |
48696193 |
attttgcagcaatgccatcaaatttacaaatgaaggcaaagtagggataaacctttatgt |
48696252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 632
Target Start/End: Complemental strand, 24626877 - 24626792
Alignment:
| Q |
547 |
aaggtacatgcaagttagtgcagaccatgctcgaaaatatggaggcacaggtctaggactagcaatatgtaaacaactggtaaact |
632 |
Q |
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|||||||||||||||| ||| ||| || |||| ||| | ||||| ||| ||||||||||||||||||| ||||||| ||||||| |
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| T |
24626877 |
aaggtacatgcaagttggtgtagatcacgctcaaaagtttggagagacaagtctaggactagcaatatgcaaacaaccagtaaact |
24626792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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