View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9895_low_15 (Length: 204)
Name: NF9895_low_15
Description: NF9895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9895_low_15 |
 | |
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| [»] scaffold0182 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 29780 - 29982
Alignment:
| Q |
2 |
attttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacatttt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29780 |
attttatatttgtttgtgatatatgtagtatcaaaggaaatcacatctccaaacactttataatcatctctaccctttccatccacccaaaatacatttt |
29879 |
T |
|
| Q |
102 |
ttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctga |
201 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29880 |
ttacatgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctga |
29979 |
T |
|
| Q |
202 |
ttc |
204 |
Q |
| |
|
||| |
|
|
| T |
29980 |
ttc |
29982 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 26397494 - 26397697
Alignment:
| Q |
1 |
cattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26397494 |
cattttatatttgtttgtgatatatgtagtatcaaaggaaatcacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattt |
26397593 |
T |
|
| Q |
101 |
tttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
26397594 |
tttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactacagcattgcctttgcatctcctg |
26397693 |
T |
|
| Q |
201 |
attc |
204 |
Q |
| |
|
|||| |
|
|
| T |
26397694 |
attc |
26397697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 26460216 - 26460010
Alignment:
| Q |
1 |
cattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| || || |||||||||||| |||| ||||||||| |||| ||| |||||| ||||||||||||| |
|
|
| T |
26460216 |
cattttatatttgtttgtgatatatgttgtatcaaaagatatcacatctccaaactctttgtaatcatctataccatttgcatccatccaaaatacattt |
26460117 |
T |
|
| Q |
101 |
tttacacgaccatcat---catccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctc |
197 |
Q |
| |
|
|| | ||||||||||| |||||||||| | |||||||||||||||| ||||| || ||||||| || || || | |||| ||||||||||||||||| |
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|
| T |
26460116 |
ttcagacgaccatcatcatcatccaaatccatcgcataaaagaatcttggattttgtttttgcataagcgtacaacattccaacattgcatttgcatctc |
26460017 |
T |
|
| Q |
198 |
ctgattc |
204 |
Q |
| |
|
||||||| |
|
|
| T |
26460016 |
ctgattc |
26460010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 25830064 - 25830235
Alignment:
| Q |
14 |
tttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccat |
113 |
Q |
| |
|
|||||||||||||| ||| | || ||||| ||||||||||| ||||||||||||||||||| ||| |||||| |||||| |||||| |||||||| | | |
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|
| T |
25830064 |
tttgtgatatatgttgtaccgaatgaaatcacatctccaaattctttataatcatctctaccttttgcatccatccaaaacacatttcttacacgatctt |
25830163 |
T |
|
| Q |
114 |
catcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattg |
185 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| | |||||||||||||||| |||||||| |||||| ||||| |
|
|
| T |
25830164 |
catcatccaaatcaattgcataaaaaaatctaggattttcttcttgcataagcataaaacactccaacattg |
25830235 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 276889 - 277092
Alignment:
| Q |
1 |
cattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
276889 |
cattttatatttgtttgtgatatatgtagtatcaaaggaaatcacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattt |
276988 |
T |
|
| Q |
101 |
tttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| |
|
|
| T |
276989 |
tttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgtataaaatacttcagcattgcctttgcatctcctg |
277088 |
T |
|
| Q |
201 |
attc |
204 |
Q |
| |
|
|||| |
|
|
| T |
277089 |
attc |
277092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 5e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 20646237 - 20646440
Alignment:
| Q |
1 |
cattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattt |
100 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||| || || |||||||||||| |||| ||||||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
20646237 |
cattttatatttgtctgtgatatatgttgtatcaaaagatatcacatctccaaactctttgtaatcatctataccatttgcatccacccaaaatacattt |
20646336 |
T |
|
| Q |
101 |
tttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctg |
200 |
Q |
| |
|
|| | ||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| || ||||| |||||| |||||||||||||||||||| |
|
|
| T |
20646337 |
ttcagacgaccatcatcatccaaatccatcgcataaaagaatcttgaatttttttcttgcataagcgtaaaacactccaacattgcatttgcatctcctg |
20646436 |
T |
|
| Q |
201 |
attc |
204 |
Q |
| |
|
|||| |
|
|
| T |
20646437 |
attc |
20646440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 56108551 - 56108348
Alignment:
| Q |
1 |
cattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattt |
100 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||| ||||| |||||||||||| ||| ||| || |||||||| ||| |||||||||||||||||||| |
|
|
| T |
56108551 |
cattttgtacttatttgtgatatatgtagtatcaaatgaaatcacatctccaaactcttgatagtcttctctaccttttgcatccacccaaaatacattt |
56108452 |
T |
|
| Q |
101 |
tttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctg |
200 |
Q |
| |
|
|| | ||||| |||||||||| ||||| |||||||||||||| || | ||||||||||||| |||||||| | || | |||||||||||||||||| | |
|
|
| T |
56108451 |
ttcatgcgaccctcatcatccatatcaattgcataaaagaatcctggactttcttcttgcatgagcataaaacaatctaacattgcatttgcatctccag |
56108352 |
T |
|
| Q |
201 |
attc |
204 |
Q |
| |
|
|||| |
|
|
| T |
56108351 |
attc |
56108348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 26014318 - 26014115
Alignment:
| Q |
1 |
cattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattt |
100 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||| ||||| |||||||||||| ||| ||| || |||||||| ||| |||||||||||||||||||| |
|
|
| T |
26014318 |
cattttgtacttatttgtgatatatgtagtatcaaatgaaatcacatctccaaactcttgatagtcttctctaccttttgcatccacccaaaatacattt |
26014219 |
T |
|
| Q |
101 |
tttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctg |
200 |
Q |
| |
|
|| | ||||| |||||||||| ||||| |||||||||||||| || | ||||||||||||| |||||||| | |||| |||||||||||||||||| | |
|
|
| T |
26014218 |
ttcatgcgaccctcatcatccatatcaattgcataaaagaatcctggactttcttcttgcatgagcataaaacaatccaacattgcatttgcatctccag |
26014119 |
T |
|
| Q |
201 |
attc |
204 |
Q |
| |
|
|||| |
|
|
| T |
26014118 |
attc |
26014115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 33002537 - 33002341
Alignment:
| Q |
1 |
cattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattt |
100 |
Q |
| |
|
|||||| || || |||||||||||||| ||||| || ||||| ||||||||||| ||| ||||||||||||||| ||| |||||||||||||||| ||| |
|
|
| T |
33002537 |
cattttgtacttatttgtgatatatgttgtatcgaatgaaatcacatctccaaattcttgataatcatctctaccttttgcatccacccaaaatacgttt |
33002438 |
T |
|
| Q |
101 |
tttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcc |
198 |
Q |
| |
|
|||||||| | |||||||||||||||| ||||||||| ||||| | |||||||||||||||| |||||||| |||||| ||||| |||||||||| |
|
|
| T |
33002437 |
cttacacgatcttcatcatccaaatcaattgcataaaa-aatctaggattttcttcttgcataagcataaaacactccaacattgttgttgcatctcc |
33002341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 6965823 - 6965619
Alignment:
| Q |
1 |
cattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatctctaccctttccatcc-acccaaaatacatt |
99 |
Q |
| |
|
|||||| || || |||||| |||||||||||||||| ||||| |||||||||||| ||| ||| | |||||||| ||| ||| | |||||||||||||| |
|
|
| T |
6965823 |
cattttgtacttatttgtggtatatgtagtatcaaatgaaatcacatctccaaactcttgatagtgttctctaccttttgcatgcgacccaaaatacatt |
6965724 |
T |
|
| Q |
100 |
ttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcct |
199 |
Q |
| |
|
||| | ||||| |||||||||| ||||| |||||||||||||| || ||||||||||||||| |||||||| | |||| ||||||||||||||||||| |
|
|
| T |
6965723 |
tttcatgcgaccctcatcatccatatcaattgcataaaagaatcctggattttcttcttgcatgagcataaaacaatccaacattgcatttgcatctcct |
6965624 |
T |
|
| Q |
200 |
gattc |
204 |
Q |
| |
|
||||| |
|
|
| T |
6965623 |
gattc |
6965619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 845527 - 845599
Alignment:
| Q |
131 |
gcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgatt |
203 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || ||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
845527 |
gcataaaagaatcttgaattttgttcttgcataagcgtaaaacactccaacattgcatttgcatctcctgatt |
845599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 198
Target Start/End: Complemental strand, 30400367 - 30400199
Alignment:
| Q |
29 |
gtatcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaa |
128 |
Q |
| |
|
|||||||| ||||| |||| |||||| ||| ||| ||||||||||| ||| |||| || |||||||||||| |||||||| | |||||||| ||||||| |
|
|
| T |
30400367 |
gtatcaaacgaaatcacattcccaaactcttgatattcatctctaccttttacatctactcaaaatacatttcttacacgatcctcatcatctaaatcaa |
30400268 |
T |
|
| Q |
129 |
atgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcc |
198 |
Q |
| |
|
|| |||| ||||| ||||| |||||||||| |||| ||| |||||| ||||||| |||| ||||| |
|
|
| T |
30400267 |
tcacacaaaaaaatctaagattttattcttgcataagcat-aaacactccaacattgcagttgcgtctcc |
30400199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 198
Target Start/End: Complemental strand, 30406924 - 30406756
Alignment:
| Q |
29 |
gtatcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaa |
128 |
Q |
| |
|
|||||||| ||||| |||| |||||| ||| ||| ||||||||||| ||| |||| || |||||||||||| |||||||| | |||||||| ||||||| |
|
|
| T |
30406924 |
gtatcaaacgaaatcacattcccaaactcttgatattcatctctaccttttacatctactcaaaatacatttcttacacgatcctcatcatctaaatcaa |
30406825 |
T |
|
| Q |
129 |
atgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcc |
198 |
Q |
| |
|
|| |||| ||||| ||||| |||||||||| |||| ||| |||||| ||||||| |||| ||||| |
|
|
| T |
30406824 |
tcacacaaaaaaatctaagattttattcttgcataagcat-aaacactccaacattgcagttgcgtctcc |
30406756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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