View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9895_low_6 (Length: 371)
Name: NF9895_low_6
Description: NF9895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9895_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 44736231 - 44735894
Alignment:
| Q |
17 |
actaaggaaaggacaaagagaaaggccatgcgatttaattagttttgttaatatccattgatttgtcattaaatgaaatgaatgagtgagatcactcaaa |
116 |
Q |
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| T |
44736231 |
actaaggaaaggacaaagagaaaggccatgcgatttaattagttttgttaatatccattgatttgtcattaaatgaaatgaatgagtgagatgactcaaa |
44736132 |
T |
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| Q |
117 |
ggagaaaacttgagaaataattcatttccgaaatgcaactaacctgactattgagatttgagaaaattctccaacagtccagtccaacttgaagaacaga |
216 |
Q |
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| T |
44736131 |
ggagaaaacttgagaaataattcatttccgaaatgcaactaacctgactattgagatttgagaaaattctccaacagtccagtccaacttgaagaacaga |
44736032 |
T |
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| Q |
217 |
acaatgccactggaacaacacgtcatagtggaaaacagagcaagtctcaatcacactcaccccaccaccacgacggcacacacttatgaatta-tttatt |
315 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44736031 |
gcaatgccactggaacaacacgtgatagtggaaaacagagcaagtctcaatcacactcaccccaccaccacgacggcacacacttatgaattattttatt |
44735932 |
T |
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| Q |
316 |
atttaaaatttcagggtattttataacaccattgtgat |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
44735931 |
atttaaaatttcagggtattttataacaccattgtgat |
44735894 |
T |
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