View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9895_low_8 (Length: 275)

Name: NF9895_low_8
Description: NF9895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9895_low_8
NF9895_low_8
[»] chr6 (20 HSPs)
chr6 (18-261)||(17496623-17496880)
chr6 (182-225)||(16703572-16703615)
chr6 (182-245)||(3722541-3722606)
chr6 (182-245)||(8659267-8659332)
chr6 (182-245)||(8821875-8821940)
chr6 (182-244)||(30495733-30495795)
chr6 (182-246)||(16704530-16704596)
chr6 (183-246)||(26575087-26575150)
chr6 (182-225)||(3721614-3721659)
chr6 (182-225)||(7314882-7314927)
chr6 (182-225)||(7316348-7316393)
chr6 (182-225)||(8660257-8660302)
chr6 (201-246)||(26574642-26574687)
chr6 (183-225)||(34834633-34834677)
chr6 (182-245)||(27318317-27318381)
chr6 (182-245)||(27322102-27322166)
chr6 (183-246)||(1829636-1829701)
chr6 (182-225)||(8822847-8822892)
chr6 (182-246)||(10784594-10784661)
chr6 (197-246)||(10785946-10785995)
[»] chr3 (36 HSPs)
chr3 (182-262)||(12700177-12700257)
chr3 (183-259)||(54987027-54987103)
chr3 (182-246)||(8456480-8456545)
chr3 (182-260)||(29932718-29932797)
chr3 (182-260)||(29981872-29981951)
chr3 (183-246)||(7267647-7267711)
chr3 (182-246)||(29931228-29931294)
chr3 (182-246)||(29980382-29980448)
chr3 (182-246)||(11671374-11671439)
chr3 (183-245)||(47610614-47610678)
chr3 (197-246)||(55192028-55192077)
chr3 (182-259)||(19984851-19984930)
chr3 (182-262)||(535799-535881)
chr3 (183-225)||(7268881-7268924)
chr3 (182-246)||(7758404-7758470)
chr3 (182-246)||(54539757-54539823)
chr3 (182-246)||(54540823-54540889)
chr3 (182-225)||(47615602-47615647)
chr3 (182-245)||(51469974-51470039)
chr3 (182-246)||(12703533-12703598)
chr3 (183-255)||(52104484-52104554)
chr3 (182-246)||(53901421-53901485)
chr3 (202-246)||(6249633-6249677)
chr3 (182-245)||(51470489-51470553)
chr3 (182-246)||(22776845-22776911)
chr3 (182-238)||(47614187-47614245)
chr3 (182-234)||(53614821-53614875)
chr3 (182-245)||(5001202-5001267)
chr3 (185-260)||(23769862-23769939)
chr3 (183-225)||(34019199-34019241)
chr3 (182-225)||(47609699-47609744)
chr3 (182-225)||(52840658-52840703)
chr3 (206-255)||(11670412-11670461)
chr3 (184-246)||(24516464-24516528)
chr3 (182-246)||(51037538-51037603)
chr3 (182-225)||(5029737-5029781)
[»] chr5 (22 HSPs)
chr5 (182-262)||(25523071-25523153)
chr5 (182-246)||(19752914-19752979)
chr5 (182-246)||(20214198-20214263)
chr5 (182-260)||(22940641-22940721)
chr5 (182-225)||(5777903-5777946)
chr5 (182-245)||(5778870-5778935)
chr5 (182-260)||(33160305-33160385)
chr5 (182-246)||(5962605-5962669)
chr5 (183-246)||(28539853-28539917)
chr5 (183-246)||(2685749-2685812)
chr5 (193-260)||(33158113-33158180)
chr5 (193-246)||(2186785-2186838)
chr5 (197-246)||(19754163-19754212)
chr5 (182-225)||(5730443-5730489)
chr5 (185-246)||(36486521-36486584)
chr5 (182-246)||(1796056-1796122)
chr5 (182-238)||(18486943-18487001)
chr5 (183-227)||(20216815-20216861)
chr5 (182-262)||(25056398-25056480)
chr5 (182-246)||(28538678-28538744)
chr5 (193-246)||(18154509-18154561)
chr5 (181-262)||(36485301-36485384)
[»] chr4 (34 HSPs)
chr4 (183-246)||(8155741-8155805)
chr4 (182-246)||(17382995-17383060)
chr4 (182-246)||(49308060-49308125)
chr4 (182-246)||(1290231-1290297)
chr4 (183-238)||(35934347-35934402)
chr4 (181-246)||(19750608-19750674)
chr4 (181-246)||(19789132-19789198)
chr4 (182-246)||(17388244-17388309)
chr4 (182-260)||(26421641-26421720)
chr4 (183-261)||(55603549-55603628)
chr4 (182-245)||(10471422-10471487)
chr4 (182-245)||(25684936-25685001)
chr4 (182-245)||(25685856-25685921)
chr4 (182-238)||(5526167-5526224)
chr4 (182-246)||(8757677-8757742)
chr4 (182-244)||(10470548-10470612)
chr4 (183-260)||(12129626-12129705)
chr4 (183-234)||(55602379-55602431)
chr4 (182-262)||(1835119-1835201)
chr4 (182-246)||(52491640-52491706)
chr4 (183-246)||(8758870-8758935)
chr4 (182-245)||(48781080-48781144)
chr4 (182-260)||(31601004-31601084)
chr4 (182-246)||(49306777-49306842)
chr4 (182-245)||(10447008-10447074)
chr4 (182-225)||(13386586-13386632)
chr4 (185-246)||(31599794-31599857)
chr4 (182-246)||(1963198-1963264)
chr4 (182-245)||(13386016-13386082)
chr4 (183-246)||(35935566-35935631)
chr4 (182-225)||(48780250-48780295)
chr4 (182-238)||(14868892-14868949)
chr4 (182-238)||(14876985-14877042)
chr4 (197-225)||(5525378-5525406)
[»] scaffold0186 (2 HSPs)
scaffold0186 (182-245)||(23083-23146)
scaffold0186 (182-225)||(23944-23989)
[»] chr2 (27 HSPs)
chr2 (182-246)||(18906020-18906086)
chr2 (182-246)||(38840526-38840592)
chr2 (183-246)||(36450954-36451018)
chr2 (182-246)||(7899915-7899981)
chr2 (182-246)||(22848193-22848259)
chr2 (182-246)||(36449780-36449846)
chr2 (182-244)||(13030294-13030355)
chr2 (182-260)||(18300743-18300821)
chr2 (182-244)||(11938823-11938887)
chr2 (182-255)||(13570581-13570656)
chr2 (182-225)||(21837309-21837352)
chr2 (186-260)||(24476863-24476937)
chr2 (182-246)||(18904369-18904435)
chr2 (182-225)||(21837072-21837115)
chr2 (201-246)||(11258844-11258889)
chr2 (182-225)||(18797248-18797294)
chr2 (183-262)||(8535673-8535752)
chr2 (182-246)||(18868926-18868992)
chr2 (182-246)||(38839244-38839310)
chr2 (182-259)||(802611-802689)
chr2 (182-225)||(1034523-1034568)
chr2 (183-246)||(13567975-13568040)
chr2 (183-225)||(7898694-7898738)
chr2 (193-246)||(28617937-28617990)
chr2 (193-246)||(32739638-32739691)
chr2 (182-225)||(1033213-1033257)
chr2 (198-246)||(24475244-24475292)
[»] chr8 (29 HSPs)
chr8 (182-262)||(8388466-8388546)
chr8 (182-243)||(12353396-12353458)
chr8 (182-246)||(5513984-5514049)
chr8 (185-246)||(1824111-1824174)
chr8 (185-246)||(1858556-1858619)
chr8 (183-246)||(29968370-29968434)
chr8 (182-244)||(23170034-23170096)
chr8 (182-246)||(32207358-32207422)
chr8 (185-246)||(43661856-43661919)
chr8 (182-238)||(10006346-10006404)
chr8 (182-238)||(10007804-10007862)
chr8 (182-262)||(22221381-22221463)
chr8 (182-262)||(22227723-22227805)
chr8 (182-244)||(5003133-5003195)
chr8 (182-246)||(5514303-5514368)
chr8 (184-244)||(45112875-45112935)
chr8 (189-260)||(18970920-18970992)
chr8 (185-246)||(45114549-45114612)
chr8 (182-246)||(1823554-1823620)
chr8 (182-246)||(1857999-1858065)
chr8 (182-262)||(12351923-12352005)
chr8 (182-246)||(18979153-18979219)
chr8 (182-246)||(30336534-30336600)
chr8 (183-246)||(11287779-11287844)
chr8 (182-225)||(11288914-11288959)
chr8 (189-246)||(18978029-18978087)
chr8 (182-225)||(24483145-24483190)
chr8 (182-246)||(24122885-24122950)
chr8 (197-225)||(24488733-24488761)
[»] chr7 (23 HSPs)
chr7 (182-245)||(127339-127403)
chr7 (182-238)||(7500457-7500514)
chr7 (183-261)||(11662569-11662649)
chr7 (182-246)||(18371426-18371492)
chr7 (182-238)||(47525408-47525466)
chr7 (182-245)||(3227628-3227693)
chr7 (182-245)||(17782587-17782652)
chr7 (193-260)||(47369796-47369863)
chr7 (182-238)||(7501893-7501951)
chr7 (182-246)||(11658381-11658447)
chr7 (181-225)||(17781662-17781708)
chr7 (182-225)||(21505418-21505461)
chr7 (182-246)||(22630485-22630551)
chr7 (182-246)||(48934936-48935002)
chr7 (182-245)||(31949324-31949389)
chr7 (197-246)||(18372490-18372539)
chr7 (182-246)||(31659624-31659691)
chr7 (187-245)||(47524532-47524592)
chr7 (182-245)||(3227110-3227174)
chr7 (182-245)||(34174017-34174081)
chr7 (182-246)||(20163589-20163655)
chr7 (182-236)||(21508447-21508501)
chr7 (182-225)||(31949856-31949901)
[»] scaffold0019 (1 HSPs)
scaffold0019 (182-262)||(61476-61558)
[»] scaffold0093 (2 HSPs)
scaffold0093 (182-245)||(2499-2563)
scaffold0093 (182-245)||(7122-7186)
[»] chr1 (32 HSPs)
chr1 (182-246)||(11437232-11437298)
chr1 (183-245)||(45150005-45150068)
chr1 (182-262)||(51685782-51685864)
chr1 (182-246)||(52274970-52275036)
chr1 (183-246)||(24426108-24426173)
chr1 (182-246)||(14999287-14999352)
chr1 (182-255)||(23980490-23980565)
chr1 (182-225)||(41364831-41364875)
chr1 (202-262)||(44404466-44404526)
chr1 (182-246)||(11436044-11436110)
chr1 (182-246)||(24422802-24422868)
chr1 (182-262)||(36613921-36614003)
chr1 (182-225)||(35594219-35594264)
chr1 (182-259)||(45157229-45157307)
chr1 (182-225)||(52827349-52827394)
chr1 (182-246)||(7674530-7674594)
chr1 (182-246)||(39222506-39222573)
chr1 (182-246)||(39699800-39699865)
chr1 (193-246)||(43058800-43058853)
chr1 (185-246)||(46066530-46066591)
chr1 (182-227)||(41366182-41366229)
chr1 (183-246)||(50680335-50680399)
chr1 (182-246)||(33088650-33088716)
chr1 (183-244)||(43378748-43378810)
chr1 (183-246)||(52276196-52276261)
chr1 (184-225)||(7987911-7987952)
chr1 (183-225)||(37526931-37526975)
chr1 (213-246)||(44411999-44412032)
chr1 (183-225)||(52828124-52828168)
chr1 (199-243)||(14999991-15000035)
chr1 (182-255)||(39698565-39698640)
chr1 (182-243)||(45148583-45148646)
[»] scaffold2034 (1 HSPs)
scaffold2034 (182-255)||(235-310)
[»] scaffold0302 (2 HSPs)
scaffold0302 (182-246)||(17472-17538)
scaffold0302 (182-260)||(18795-18875)
[»] scaffold1303 (1 HSPs)
scaffold1303 (182-262)||(1441-1523)
[»] scaffold0294 (2 HSPs)
scaffold0294 (182-246)||(5471-5537)
scaffold0294 (182-244)||(4444-4508)
[»] scaffold0632 (1 HSPs)
scaffold0632 (182-225)||(3362-3406)
[»] scaffold0369 (1 HSPs)
scaffold0369 (182-214)||(13195-13227)
[»] scaffold0112 (1 HSPs)
scaffold0112 (182-245)||(37150-37214)
[»] scaffold0059 (1 HSPs)
scaffold0059 (193-225)||(3690-3722)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 17496623 - 17496880
Alignment:
Q  18 gttttcacttccattttcatatttaactaatttttaataaaattgatcttt-aggtaattttgttagggtaattaacaaagaattctcctatagaaaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    ||||||||||||||||||||||||    
T  17496623 gttttcacttccattttcatatttaactaatttttaataaaattgattttttaggtaattttgttagggtaa----caaagaattctcctatagaaaaag 17496718  T
Q  117 agtaaagatccaactttcttatattttttctcaacccaatttaacaatacccatattaagcacta-----------ctaaagtgcacttt------tccc 199  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||           |||||||||| |||      ||||    
T  17496719 agtaaagatccaattttcttatattttttctcaacccaatttaacaatacccatattaagctctaatttttttaggctaaagtgcatttttccccctccc 17496818  T
Q  200 cctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccc 261  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||||  |||||| |||||    
T  17496819 cctaactttcaaaaacttacaattttaaccctctaagtacaaaaactgcaattttggccccc 17496880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 16703572 - 16703615
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  16703572 ctaaagtgcacttttccccctatctttcaaaaacttgcaatttt 16703615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 3722606 - 3722541
Alignment:
Q  182 ctaaagtgcacttttccc--cctaactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||   ||||||||||| |||||    
T  3722606 ctaaagtgcacttttccctccctaactttcaaaaacttgcaattttgaccctctaagtaccaaaac 3722541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 8659267 - 8659332
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| | || |||||||| |||||    
T  8659267 ctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtaccaaaac 8659332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 8821875 - 8821940
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| | || |||||||| |||||    
T  8821875 ctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtaccaaaac 8821940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 30495795 - 30495733
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaa 244  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||| ||| ||| |||||||||    
T  30495795 ctaaagtgcactttttcccctaactttcaaaaagttgcgattttaatcccctatgtacaaaaa 30495733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 16704596 - 16704530
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||   || |||||||||||||||    
T  16704596 ctaaagtgcacttttcctcccttaactttcaaaaacttgcaattttgaccccctaagtacaaaaact 16704530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 26575150 - 26575087
Alignment:
Q  183 taaagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||| | | ||||||||||||||||||||||||||  ||  ||||||||||||||    
T  26575150 taaagtgcactttcctctctaactttcaaaaacttgcaattttaaccccttaagtacaaaaact 26575087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 3721614 - 3721659
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||||||||  |||||||||||||||||||||||    
T  3721614 ctaaagtgcacttttccccctctaactttcaaaaacttgcaatttt 3721659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 7314882 - 7314927
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||||||||  |||||||||||||||||||||||    
T  7314882 ctaaagtgcacttttccccctctaactttcaaaaacttgcaatttt 7314927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 7316393 - 7316348
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaatttt 225  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  7316393 ctaaagtgcacttttccccccttaactttcaaaaacttgcaatttt 7316348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 8660302 - 8660257
Alignment:
Q  182 ctaaagtgcacttttcccc--ctaactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||||||  |||||||||||||||||||||||||    
T  8660302 ctaaagtgcacttttcccctcctaactttcaaaaacttgcaatttt 8660257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 26574642 - 26574687
Alignment:
Q  201 ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||||||||||   ||||||||||||||||||    
T  26574642 ctaactttcaaaaacttgcaattttgaacctctaagtacaaaaact 26574687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 34834677 - 34834633
Alignment:
Q  183 taaagtgcacttttccc--cctaactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||||  ||||||||||||||||||||||||||    
T  34834677 taaagtgcacttttccctccctaactttcaaaaacttgcaatttt 34834633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 27318317 - 27318381
Alignment:
Q  182 ctaaagtgcac-ttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||||| | || |||||||| |||||    
T  27318317 ctaaagtgcaccttttccccctatctttcaaaatcttgcaattttggccccctaagtaccaaaac 27318381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 27322166 - 27322102
Alignment:
Q  182 ctaaagtgcacttttccccc-taactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    |||||||||||||||||||| || ||||||||| ||||||||||| | || |||||||| |||||    
T  27322166 ctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggccccctaagtaccaaaac 27322102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 1829701 - 1829636
Alignment:
Q  183 taaagtgcactttt--ccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||   || ||||||| |||||||    
T  1829701 taaagtgcacttttttccccctaacttttaaaaacttgcaattttgaccccctaagtataaaaact 1829636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 8822892 - 8822847
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||||| ||  |||||||||||||||||||||||    
T  8822892 ctaaagtgcacttttccctctttaactttcaaaaacttgcaatttt 8822847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 10784594 - 10784661
Alignment:
Q  182 ctaaagtgcacttttccccc---taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||| |   ||||||| |||||||||||||||||  || ||||||| |||||||    
T  10784594 ctaaagtgcacttttccctcccttaacttttaaaaacttgcaattttaaccccctaagtataaaaact 10784661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 10785995 - 10785946
Alignment:
Q  197 ccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||| ||||| |||||||||||  || |||||||||||||||    
T  10785995 ccccctaacttttaaaaatttgcaattttaaccccctaagtacaaaaact 10785946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 12700177 - 12700257
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccct 262  Q
    |||||||||||||| ||||||||||||||||||||||||||||| | || |||||||||||||||   |||||||||||||    
T  12700177 ctaaagtgcactttcccccctaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttgaccccct 12700257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 54987103 - 54987027
Alignment:
Q  183 taaagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccc 259  Q
    |||||||||||||||||||||| ||||||||| |||| |||||||||| ||| ||| ||||||| | ||||||||||    
T  54987103 taaagtgcacttttccccctaagtttcaaaaagttgcgattttagtcccctatgtataaaaactataattttgaccc 54987027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 8456480 - 8456545
Alignment:
Q  182 ctaaagtgcactttt-ccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||| |||||||| |||||||||||||||||||| |||| |||| ||||||||||    
T  8456480 ctaaagtgcactttttccccctaattttcaaaaacttgcaattttggtcccctaaatacaaaaact 8456545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 29932797 - 29932718
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgacccc 260  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| | || |||||||||||||||   |||||||||||    
T  29932797 ctaaagtgcacttttccccctctaactttcaaaaacttgcaatttt-ggcccctaagtacaaaaactacaattttgacccc 29932718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 29981951 - 29981872
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgacccc 260  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| | || |||||||||||||||   |||||||||||    
T  29981951 ctaaagtgcacttttccccctctaactttcaaaaacttgcaatttt-ggcccctaagtacaaaaactacaattttgacccc 29981872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 7267647 - 7267711
Alignment:
Q  183 taaagtgcacttttccccct-aactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||||| ||||||||||||||||||||||| | || ||||||||| |||||    
T  7267647 taaagtgcacttttcccccttaactttcaaaaacttgcaattttggccccctaagtacagaaact 7267711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 29931228 - 29931294
Alignment:
Q  182 ctaaagtgcacttttcc--ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||  ||||||||||||||||||||||||||| | || |||| ||||||||||    
T  29931228 ctaaagtgcacttttccacccctaactttcaaaaacttgcaatttttgccccctaaatacaaaaact 29931294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 29980382 - 29980448
Alignment:
Q  182 ctaaagtgcacttttcc--ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||  ||||||||||||||||||||||||||| | || |||| ||||||||||    
T  29980382 ctaaagtgcacttttccacccctaactttcaaaaacttgcaatttttgccccctaaatacaaaaact 29980448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 11671439 - 11671374
Alignment:
Q  182 ctaaagtgcacttttccc-cctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||| || |||||||||||||||||||||||||||| || |||| || |||||||    
T  11671439 ctaaagtgcactttttccgcctaactttcaaaaacttgcaattttagccccctaaatataaaaact 11671374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 47610678 - 47610614
Alignment:
Q  183 taaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| | || |||||||| |||||    
T  47610678 taaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtaccaaaac 47610614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 55192077 - 55192028
Alignment:
Q  197 ccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||| |||||||||||||||||||||||| | ||||||||||||||||||    
T  55192077 ccccttaactttcaaaaacttgcaattttggccctctaagtacaaaaact 55192028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 19984851 - 19984930
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccc 259  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||| | || ||| |||||||||||   ||||||||||    
T  19984851 ctaaagtgcacttttccccccctaagtttcaaaaacttgcaattttggccccctatgtacaaaaactacaattttgaccc 19984930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 535881 - 535799
Alignment:
Q  182 ctaaagtgcacttttcc--ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccct 262  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||| ||||  ||||||  |||||| | ||||| |||||||    
T  535881 ctaaagtgtacttttccacccctaactttcaaaaacttgcaattttggtcccttaagtattaaaactataattttcaccccct 535799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 7268924 - 7268881
Alignment:
Q  183 taaagtgcacttttccccc-taactttcaaaaacttgcaatttt 225  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  7268924 taaagtgcacttttcccccctaactttcaaaaacttgcaatttt 7268881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 7758404 - 7758470
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||||   || |||||||||||||||    
T  7758404 ctaaagtgcactttttcccccttaactttcaaaaacttgcaattttgaccccctaagtacaaaaact 7758470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 54539757 - 54539823
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||||  || |||| ||||||||||    
T  54539757 ctaaagtgcacttttccacccttaactttcaaaaacttgcaattttaaccccctaaatacaaaaact 54539823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 54540889 - 54540823
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||   ||  ||||||||||||||    
T  54540889 ctaaagtgcacttttccccccttaactttcaaaaacttgcaattttgaccccttaagtacaaaaact 54540823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 47615647 - 47615602
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaatttt 225  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  47615647 ctaaagtgcacttttccccccttaactttcaaaaacttgcaatttt 47615602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 51469974 - 51470039
Alignment:
Q  182 ctaaagtgcacttttccc--cctaactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||| | || |||||||| |||||    
T  51469974 ctaaagtgcacttttccctccctaattttcaaaaacttgcaattttggccccctaagtaccaaaac 51470039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 12703598 - 12703533
Alignment:
Q  182 ctaaagtgcacttttcccc-ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||| ||| |||||||||||||| ||| |||||| | || |||||||||||||||    
T  12703598 ctaaagtgcactttttccctctaactttcaaaaatttgtaattttggccccctaagtacaaaaact 12703533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 52104484 - 52104554
Alignment:
Q  183 taaagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttg 255  Q
    |||| ||||||||||||||||||||||||||| ||| |||||| |||  ||| ||||||||||| | ||||||    
T  52104484 taaaatgcacttttccccctaactttcaaaaagttgtaattttggtc--ctatgtacaaaaactataattttg 52104554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 53901485 - 53901421
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaacttgcaatttt-agtcctctaagtacaaaaact 246  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||| | |||| ||||||||||||||    
T  53901485 ctaaagtgcacttttccccctaagtttaaaaaagttgcaattttgactcct-taagtacaaaaact 53901421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 6249633 - 6249677
Alignment:
Q  202 taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||    
T  6249633 taactttcaaaaacttgcaattttaatcccttaagtacaaaaact 6249677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 51470553 - 51470489
Alignment:
Q  182 ctaaagtgcacttttccccc-taactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    |||||||||||| ||||||| |||||||||||||||||||||||   ||| |||||||| |||||    
T  51470553 ctaaagtgcactcttcccccctaactttcaaaaacttgcaatttagatcccctaagtaccaaaac 51470489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 22776911 - 22776845
Alignment:
Q  182 ctaaagtgcacttttcc--ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||  |||||||||||| ||| |||||||||| | || ||| |||||||||||    
T  22776911 ctaaagtgcacttttccacccctaactttcagaaagttgcaattttggccccctatgtacaaaaact 22776845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 47614187 - 47614245
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagta 238  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||| | || |||||||    
T  47614187 ctaaagtgcactttttcccctctaactttcaaaaacttgcaattttggccccctaagta 47614245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 53614821 - 53614875
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctcta 234  Q
    |||||||||| |||||| ||  |||||||||||||||| ||||||||||||||||    
T  53614821 ctaaagtgcatttttcctcccttaactttcaaaaacttacaattttagtcctcta 53614875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 5001202 - 5001267
Alignment:
Q  182 ctaaagtgcacttttcc--ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    |||||||||||||||||  ||||| ||||||||| ||||||||||| | || |||||||| |||||    
T  5001202 ctaaagtgcacttttcctcccctatctttcaaaatcttgcaattttggccccctaagtaccaaaac 5001267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 23769862 - 23769939
Alignment:
Q  185 aagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgacccc 260  Q
    |||||||||||||| ||  |||||||||| || ||||||||||| ||||||| || ||||||||   |||||||||||    
T  23769862 aagtgcacttttccacccttaactttcaacaagttgcaattttaatcctctatgtgcaaaaactacaattttgacccc 23769939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 34019241 - 34019199
Alignment:
Q  183 taaagtgcacttttccccctaactttcaaaaacttgcaatttt 225  Q
    |||||| || |||||||| ||||||||||||||||||||||||    
T  34019241 taaagtacatttttccccttaactttcaaaaacttgcaatttt 34019199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 47609699 - 47609744
Alignment:
Q  182 ctaaagtgcacttttcccc--ctaactttcaaaaacttgcaatttt 225  Q
    ||||| |||||||||||||  |||||||||||||||||||||||||    
T  47609699 ctaaaatgcacttttccccccctaactttcaaaaacttgcaatttt 47609744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 52840703 - 52840658
Alignment:
Q  182 ctaaagtgcacttttcc--ccctaactttcaaaaacttgcaatttt 225  Q
    ||||||||| |||||||  |||||||||||||||||||||||||||    
T  52840703 ctaaagtgcccttttcctcccctaactttcaaaaacttgcaatttt 52840658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 11670412 - 11670461
Alignment:
Q  206 tttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttg 255  Q
    ||||||||| ||||||||||||||| ||||||| ||||||| | ||||||    
T  11670412 tttcaaaaatttgcaattttagtcccctaagtataaaaactataattttg 11670461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 24516464 - 24516528
Alignment:
Q  184 aaagtgcactttt--ccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||  |||||||||||| |||||||||||||||| |  | ||||||| |||||||    
T  24516464 aaagtgcactttttcccccctaactttaaaaaacttgcaattttggcaccctaagtataaaaact 24516528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 51037538 - 51037603
Alignment:
Q  182 ctaaagtgcacttttccccct-aactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||| |||| |||||||||||| ||||||||||   |||||| | |||||||||    
T  51037538 ctaaagtgcacttttctcccttaactttcaaaaagttgcaattttgaccctctatgaacaaaaact 51037603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 5029781 - 5029737
Alignment:
Q  182 ctaaagtgcacttttccccc-taactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||||||| || ||||||||| |||||||||||    
T  5029781 ctaaagtgcacttttcccccctatctttcaaaatcttgcaatttt 5029737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 25523071 - 25523153
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccct 262  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||||||   |||||||||||||    
T  25523071 ctaaagtgcacttttccccccttaactttcaaaaacttgcaattttagccccctaagtacaaaaactacaattttgaccccct 25523153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 19752914 - 19752979
Alignment:
Q  182 ctaaagtgcacttttcccc-ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| | || |||||||||||||||    
T  19752914 ctaaagtgcacttttcccccctaactttcaaaaacttgcaattttggccccctaagtacaaaaact 19752979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 20214198 - 20214263
Alignment:
Q  182 ctaaagtgcacttttccccct-aactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||  ||||| |||||||||||    
T  20214198 ctaaagtgcacttttcccccttaactttcaaaaacttgcaattttagcactctatgtacaaaaact 20214263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 22940721 - 22940641
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgacccc 260  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| | || ||||||||||||| |   |||||||||||    
T  22940721 ctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtacaaaaattacaattttgacccc 22940641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 5777903 - 5777946
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaacttgcaatttt 225  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  5777903 ctaaagtgcactttcccccctaactttcaaaaacttgcaatttt 5777946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 5778935 - 5778870
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| | || |||||||| |||||    
T  5778935 ctaaagtgcacttttccccctctaactttcaaaaacttgcaatttttgccccctaagtaccaaaac 5778870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 33160385 - 33160305
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgacccc 260  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||| || ||||||| | |||||   |||||||||||    
T  33160385 ctaaagtgcacttttccccccttaattttcaaaaacttgcaattttagccccctaagtatagaaactacaattttgacccc 33160305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 5962669 - 5962605
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||| || || ||||||||||| ||| |||||| |||| |||||||||||||||    
T  5962669 ctaaagtgcactttttccactgactttcaaaaatttgtaattttggtcccctaagtacaaaaact 5962605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 28539917 - 28539853
Alignment:
Q  183 taaagtgcacttttccccc-taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||||   ||||||||||||||||||    
T  28539917 taaagtgcatttttcccccctaacttttaaaaacttgcaattttgaccctctaagtacaaaaact 28539853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 2685749 - 2685812
Alignment:
Q  183 taaagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||| |||||| |||||||||| ||||||||||||  |||||| |||| |||||||||||||||    
T  2685749 taaaatgcactattccccctaattttcaaaaacttataattttggtcccctaagtacaaaaact 2685812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 33158113 - 33158180
Alignment:
Q  193 ttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgacccc 260  Q
    |||||||||||||||||||||||||||||||||    | |||||||||||||||   |||||||||||    
T  33158113 ttttccccctaactttcaaaaacttgcaattttgacaccctaagtacaaaaactacaattttgacccc 33158180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 2186785 - 2186838
Alignment:
Q  193 ttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||| ||||||||| |||||||||| ||| |||| |||||||||||    
T  2186785 ttttccccctaagtttcaaaaagttgcaattttggtcttctatgtacaaaaact 2186838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 19754212 - 19754163
Alignment:
Q  197 ccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||||||||||||||| | || |||| ||||||||||    
T  19754212 ccccctaactttcaaaaacttgcaattttggccccctaaatacaaaaact 19754163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 5730443 - 5730489
Alignment:
Q  182 ctaaagtgcacttttccccc---taactttcaaaaacttgcaatttt 225  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||    
T  5730443 ctaaagtgcacttttcccccccttaactttcaaaaacttgcaatttt 5730489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 36486584 - 36486521
Alignment:
Q  185 aagtgcactttt--ccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||  |||||||||||| ||||||||||||||||   || |||||||||||||||    
T  36486584 aagtgcactttttcccccctaacttttaaaaacttgcaattttgaccccctaagtacaaaaact 36486521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 1796056 - 1796122
Alignment:
Q  182 ctaaagtgcacttttcc--ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||| ||||||  ||||||||||||||||||||||| ||| | |  |||||||||||||||    
T  1796056 ctaaagtgcatttttccacccctaactttcaaaaacttgcaactttggccacctaagtacaaaaact 1796122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 18487001 - 18486943
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagta 238  Q
    |||||||||||||| |||||  |||||||||||||||||||||||| | || |||||||    
T  18487001 ctaaagtgcactttcccccccttaactttcaaaaacttgcaattttggccccctaagta 18486943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 20216861 - 20216815
Alignment:
Q  183 taaagtgcacttttccccc--taactttcaaaaacttgcaattttag 227  Q
    |||||||||||||||||||  ||| ||||||||||||||||||||||    
T  20216861 taaagtgcacttttccccccttaattttcaaaaacttgcaattttag 20216815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 25056480 - 25056398
Alignment:
Q  182 ctaaagtgcacttttcccc--ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccct 262  Q
    ||||||||||||||||| |  |||||||||||||||||||||||||   || |||||||  ||||||   |||||||||||||    
T  25056480 ctaaagtgcacttttccactcctaactttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgaccccct 25056398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 28538678 - 28538744
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||   ||  ||||||||||||||    
T  28538678 ctaaagtgcacttttccacccgtaactttcaaaaacttgcaattttgaccccttaagtacaaaaact 28538744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 18154509 - 18154561
Alignment:
Q  193 ttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||| |||||||||||||||| ||||||| | || |||||||||||||||    
T  18154509 ttttccccttaactttcaaaaacttacaatttt-gacccctaagtacaaaaact 18154561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 36485301 - 36485384
Alignment:
Q  181 actaaagtgcacttttcc--ccctaactttcaaaaacttgcaattttagtcctc-taagtacaaaaactgttattttgaccccct 262  Q
    ||||||||||| ||||||  |||||||||| |||||||| ||||||| | |||| |||||||||||||| | |||||| ||||||    
T  36485301 actaaagtgcatttttccacccctaactttaaaaaacttacaatttt-gacctcttaagtacaaaaactataattttggccccct 36485384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 8155741 - 8155805
Alignment:
Q  183 taaagtgcacttttccccctaactttcaaaaacttgcaattttag-tcctctaagtacaaaaact 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||    
T  8155741 taaagtgcacttttccccctaactttcaaaaacttgcaattttagctcccctaagttcaaaaact 8155805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 17382995 - 17383060
Alignment:
Q  182 ctaaagtgcacttttc-cccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  17382995 ctaaagtgcacttttctcccctaactttcaaaaacttgcaattttggtcccttaagtacaaaaact 17383060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 49308125 - 49308060
Alignment:
Q  182 ctaaagtgcacttttccccc-taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||||| |||||||||||||||||||||||| | || |||||||||||||||    
T  49308125 ctaaagtgcacttttcccccctaactttcaaaaacttgcaattttggccccctaagtacaaaaact 49308060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 1290297 - 1290231
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||| | ||||||||||||||||||    
T  1290297 ctaaagtgcacttttccccccttaactttcaaaatcttgcaattttggccctctaagtacaaaaact 1290231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 35934347 - 35934402
Alignment:
Q  183 taaagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagta 238  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||| |||||||    
T  35934347 taaagtgcacttttccccctaactttcaaaaacttgtaattttggtcccctaagta 35934402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 19750674 - 19750608
Alignment:
Q  181 actaaagtgcacttttccccc-taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||| | || |||||||||||||||    
T  19750674 actaaagtgcacttttcccccctaacttttaaaaacttgcaattttggccccctaagtacaaaaact 19750608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 19789132 - 19789198
Alignment:
Q  181 actaaagtgcacttttcccc-ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| | || |||||||||||||||    
T  19789132 actaaagtgcacttttcccccctaacttttaaaaacttgcaattttggccccctaagtacaaaaact 19789198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 17388309 - 17388244
Alignment:
Q  182 ctaaagtgcacttttccccc-taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||  |||||||| |||||    
T  17388309 ctaaagtgcacttttcccccctaactttcaaaaacttgcaattttggtcccttaagtacataaact 17388244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 26421720 - 26421641
Alignment:
Q  182 ctaaagtgcacttttcccc-ctaactttcaaaaacttgcaattttagtcct-ctaagtacaaaaactgttattttgacccc 260  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| | ||| |||||||||||||||   |||||||||||    
T  26421720 ctaaagtgcacttttcccctctaactttcaaaaacttgcaatttt-gacctcctaagtacaaaaactacaattttgacccc 26421641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 55603628 - 55603549
Alignment:
Q  183 taaagtgcacttttccccct-aactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccc 261  Q
    |||||||||||||| ||||| |||||||||||||||||||||||| ||| ||  |||||||||||  ||||||| |||||    
T  55603628 taaagtgcactttttccccttaactttcaaaaacttgcaattttaatcccctgtgtacaaaaactactattttggccccc 55603549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 10471487 - 10471422
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| | || |||||||| |||||    
T  10471487 ctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtaccaaaac 10471422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 25684936 - 25685001
Alignment:
Q  182 ctaaagtgcacttttcccc--ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    |||||||||||||||||||  |||||||||||||||||||||||||   ||||||||||| |||||    
T  25684936 ctaaagtgcacttttccccccctaactttcaaaaacttgcaattttgaccctctaagtaccaaaac 25685001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 25685921 - 25685856
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| | || |||||||| |||||    
T  25685921 ctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtaccaaaac 25685856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 5526224 - 5526167
Alignment:
Q  182 ctaaagtgcacttttcccc-ctaactttcaaaaacttgcaattttagtcctctaagta 238  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| | || |||||||    
T  5526224 ctaaagtgcacttttcccctctaactttcaaaaacttgcaattttggccccctaagta 5526167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 8757677 - 8757742
Alignment:
Q  182 ctaaagtgcacttttccccct-aactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||||||| || ||||||||| |||||    
T  8757677 ctaaagtgcactttttccccttaactttcaaaaacttacaattttagccccctaagtacagaaact 8757742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 10470548 - 10470612
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaa 244  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||   ||||||||||| ||||    
T  10470548 ctaaagtgcacttttccccccttaactttcaaaaacttgcaattttgaccctctaagtaccaaaa 10470612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 12129626 - 12129705
Alignment:
Q  183 taaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgacccc 260  Q
    ||||||||||||||||||   |||||||||||||||||||||||| | ||  ||||||||||||||   |||||||||||    
T  12129626 taaagtgcacttttcccctcttaactttcaaaaacttgcaattttggccccgtaagtacaaaaactacaattttgacccc 12129705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 55602379 - 55602431
Alignment:
Q  183 taaagtgcacttttccccct-aactttcaaaaacttgcaattttagtcctcta 234  Q
    ||||||||| |||||||| | ||||||||||||||||||||||||||||||||    
T  55602379 taaagtgcatttttcccctttaactttcaaaaacttgcaattttagtcctcta 55602431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 1835201 - 1835119
Alignment:
Q  182 ctaaagtgcacttttcc--ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccct 262  Q
    |||||||||||||||||  |||||||||||||||||||||||||||   || |||||||  ||||||   |||||||||||||    
T  1835201 ctaaagtgcacttttccatccctaactttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgaccccct 1835119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 52491706 - 52491640
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||| |||||||| ||  |||||||||||||||||||||||| ||||||||| |||| |||||    
T  52491706 ctaaagtgtacttttccacccttaactttcaaaaacttgcaattttggtcctctaaatacagaaact 52491640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 8758935 - 8758870
Alignment:
Q  183 taaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||| ||||||||||||||  |||||||||||||||||||||||| | || ||||||||| |||||    
T  8758935 taaaatgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtacagaaact 8758870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 48781144 - 48781080
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    |||||||||||||||||||||  |||||||||||| |||||||||| |||| |||||||| |||||    
T  48781144 ctaaagtgcacttttccccctctaactttcaaaaatttgcaattttggtcc-ctaagtactaaaac 48781080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 31601084 - 31601004
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgacccc 260  Q
    ||||||||||||||| |||||  |||||| ||||||||||||||||   || |||||||||||||||   |||||||||||    
T  31601084 ctaaagtgcactttttcccctctaacttttaaaaacttgcaattttgaccccctaagtacaaaaactacaattttgacccc 31601004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 49306777 - 49306842
Alignment:
Q  182 ctaaagtgcacttttc-cccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||  |||| ||||||||||||||||||||||| | | | ||||||||||||||    
T  49306777 ctaaagtgcacttttttcccccaactttcaaaaacttgcaattttggccatttaagtacaaaaact 49306842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 10447008 - 10447074
Alignment:
Q  182 ctaaagtgcacttttccccct---aactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    |||||||||||||||||||||   || ||||||||| |||||||||||| || ||| ||||||||||    
T  10447008 ctaaagtgcacttttccccctcttaagtttcaaaaagttgcaattttagccccctatgtacaaaaac 10447074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 13386632 - 13386586
Alignment:
Q  182 ctaaagtgcactttt---ccccctaactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||   |||||||||||||||||||||||||||||    
T  13386632 ctaaagtgcactttttccccccctaactttcaaaaacttgcaatttt 13386586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 31599794 - 31599857
Alignment:
Q  185 aagtgcactttt--ccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||  |||||||||||| ||||||||||||||||   || |||||||||||||||    
T  31599794 aagtgcactttttcccccctaacttttaaaaacttgcaattttgaccccctaagtacaaaaact 31599857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 1963198 - 1963264
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||| | |  ||| |||||||||||    
T  1963198 ctaaagtgcacttttccccccttaactttcaaaaagttgcaattttggcctcctatgtacaaaaact 1963264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 13386016 - 13386082
Alignment:
Q  182 ctaaagtgcacttttcccc--ctaactttc-aaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||| | || |||||||| |||||    
T  13386016 ctaaagtgcacttttccccctctaactttcaaaaaacttgcaattttggccccctaagtaccaaaac 13386082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 35935631 - 35935566
Alignment:
Q  183 taaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||| |||||  ||||||| ||||| |||||||||||| || ||||||||| |||||    
T  35935631 taaagtgcactttcccccccttaacttttaaaaatttgcaattttagccccctaagtacataaact 35935566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 48780250 - 48780295
Alignment:
Q  182 ctaaagtgcacttttcccc--ctaactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||||||  |||||||| ||||||||||||||||    
T  48780250 ctaaagtgcacttttccccccctaacttttaaaaacttgcaatttt 48780295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 14868892 - 14868949
Alignment:
Q  182 ctaaagtgcacttttccccc-taactttcaaaaacttgcaattttagtcctctaagta 238  Q
    |||||||||||||||||||| || ||||||||| ||||||||||| | || |||||||    
T  14868892 ctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggcccgctaagta 14868949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 14877042 - 14876985
Alignment:
Q  182 ctaaagtgcacttttccccc-taactttcaaaaacttgcaattttagtcctctaagta 238  Q
    |||||||||||||||||||| || ||||||||| ||||||||||| | || |||||||    
T  14877042 ctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggcccgctaagta 14876985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 5525378 - 5525406
Alignment:
Q  197 ccccctaactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||||||||||||||||    
T  5525378 ccccctaactttcaaaaacttgcaatttt 5525406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 23083 - 23146
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| |||||    
T  23083 ctaaagtgcacttttccccctaactttcaaaaacttgcaattttgtccctctaagtaccaaaac 23146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 23989 - 23944
Alignment:
Q  182 ctaaagtgcactttt--ccccctaactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||  | |||||||||||||||||||||||||||    
T  23989 ctaaagtgcacttttttctccctaactttcaaaaacttgcaatttt 23944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 18906086 - 18906020
Alignment:
Q  182 ctaaagtgcacttttcccc--ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||| || |||||||||||||||    
T  18906086 ctaaagtgcacttttccccttctaactttcaaaaacttgcaattttagccccctaagtacaaaaact 18906020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 38840592 - 38840526
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||||||    
T  38840592 ctaaagtgcacttttccccccttaactttcaaaaacttgcaattttagccccctaagtacaaaaact 38840526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 36451018 - 36450954
Alignment:
Q  183 taaagtgcacttttccccct-aactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| |||||    
T  36451018 taaagtgcacttttcccccttaactttcaaaaacttgcaattttggtcccctaagtacagaaact 36450954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 7899981 - 7899915
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |||| ||||||||| |||||    
T  7899981 ctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggtcccctaagtacagaaact 7899915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 22848193 - 22848259
Alignment:
Q  182 ctaaagtgcactttt--ccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| |||| |||| ||||||||||    
T  22848193 ctaaagtgcacttttacccccctaactttcaaaaacttgcaattttggtcccctaaatacaaaaact 22848259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 36449780 - 36449846
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| | || |||||||||||||||    
T  36449780 ctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtacaaaaact 36449846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 13030294 - 13030355
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaa 244  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | || |||||||||||||    
T  13030294 ctaaagtgcacttttccccctaactttcaaaaacttgtaatttt-ggcccctaagtacaaaaa 13030355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 18300821 - 18300743
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgacccc 260  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||   || |||||||||||||||   |||||||||||    
T  18300821 ctaaattgcacttttccccctaactttcataaacttgcaattttgaccccctaagtacaaaaactacaattttgacccc 18300743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 11938887 - 11938823
Alignment:
Q  182 ctaaagtgcacttttcc--ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaa 244  Q
    |||||||||||||||||  ||||||||||||||||||||||||||| |||  |||||||||||||    
T  11938887 ctaaagtgcacttttccacccctaactttcaaaaacttgcaattttggtctcctaagtacaaaaa 11938823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 13570656 - 13570581
Alignment:
Q  182 ctaaagtgcacttttc--cccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttg 255  Q
    |||||||||| |||||  ||| |||||||||||||||||||||||||||||  |||||||||||||| | ||||||    
T  13570656 ctaaagtgcatttttctacccataactttcaaaaacttgcaattttagtcccttaagtacaaaaactataattttg 13570581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 21837352 - 21837309
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaacttgcaatttt 225  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  21837352 ctaaagtgcactttttcccctaactttcaaaaacttgcaatttt 21837309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 24476937 - 24476863
Alignment:
Q  186 agtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgacccc 260  Q
    ||||||||||| |||| |||||| ||||||||| |||||| |||| |||||||||||||||   |||||||||||    
T  24476937 agtgcactttttcccccaacttttaaaaacttgtaattttggtcccctaagtacaaaaactacaattttgacccc 24476863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 18904369 - 18904435
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||| | ||  ||||||||||||||    
T  18904369 ctaaagtgcacttttccccccttaactttcaaaaacgtgcaattttggccccttaagtacaaaaact 18904435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 21837072 - 21837115
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaacttgcaatttt 225  Q
    ||||||||||||||| || |||||||||||||||||||||||||    
T  21837072 ctaaagtgcactttttcctctaactttcaaaaacttgcaatttt 21837115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 11258889 - 11258844
Alignment:
Q  201 ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||||||||||| | || |||||||||||||||    
T  11258889 ctaactttcaaaaacttgcaattttggccccctaagtacaaaaact 11258844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 18797248 - 18797294
Alignment:
Q  182 ctaaagtgcacttttcc---ccctaactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||||   |||||||||||||||||||||||||||    
T  18797248 ctaaagtgcacttttccaccccctaactttcaaaaacttgcaatttt 18797294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 8535752 - 8535673
Alignment:
Q  183 taaagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccct 262  Q
    |||||| ||||||||| ||||||||| ||||||||| ||||||  |||| |||||| | |||||   |||||||||||||    
T  8535752 taaagtacacttttcctcctaacttttaaaaacttgtaattttgatcctttaagtagagaaactacaattttgaccccct 8535673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 18868926 - 18868992
Alignment:
Q  182 ctaaagtgcacttttcc--ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||| | |  |||| ||||||||||    
T  18868926 ctaaagtgtacttttccacccctaactttcaaaaacttgcaattttggcctcctaaatacaaaaact 18868992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 38839244 - 38839310
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||| |||| ||||  ||| |||||||||||||||||||||| || |||| ||||||||||    
T  38839244 ctaaagtgcattttttcccccttaattttcaaaaacttgcaattttagccccctaactacaaaaact 38839310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 802689 - 802611
Alignment:
Q  182 ctaaagtgcacttttccccc-taactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccc 259  Q
    |||||||| ||||||||||| ||| |||||||||||||||||||| | || ||  |||||||||||   ||||||||||    
T  802689 ctaaagtgtacttttcccccctaagtttcaaaaacttgcaattttggccccctgtgtacaaaaactacaattttgaccc 802611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 1034568 - 1034523
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaatttt 225  Q
    ||||||||||||||||||||  |||||||||||||| |||||||||    
T  1034568 ctaaagtgcacttttccccccttaactttcaaaaacatgcaatttt 1034523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 13567975 - 13568040
Alignment:
Q  183 taaagtgcacttttcccc--ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||| ||||||||||  |||| |||||||||||||||||||| | || |||| ||||||||||    
T  13567975 taaagtgtacttttccccttctaagtttcaaaaacttgcaattttggccccctaaatacaaaaact 13568040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 7898694 - 7898738
Alignment:
Q  183 taaagtgcacttttccccc--taactttcaaaaacttgcaatttt 225  Q
    ||||||||||||||| |||  ||||||||||||||||||||||||    
T  7898694 taaagtgcacttttctccccttaactttcaaaaacttgcaatttt 7898738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 28617937 - 28617990
Alignment:
Q  193 ttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||| ||||||||||||||| ||||||||||| | || | |||||||||||||    
T  28617937 ttttctccctaactttcaaaatcttgcaattttggccccccaagtacaaaaact 28617990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 32739638 - 32739691
Alignment:
Q  193 ttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||| |||||||||||||||||||||||||||| | ||  || |||||||||||    
T  32739638 tttttcccctaactttcaaaaacttgcaattttggccccttatgtacaaaaact 32739691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 1033213 - 1033257
Alignment:
Q  182 ctaaagtgcacttttcccc-ctaactttcaaaaacttgcaatttt 225  Q
    |||||||| |||||||||| |||||||| ||||||||||||||||    
T  1033213 ctaaagtgtacttttcccccctaacttttaaaaacttgcaatttt 1033257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 24475244 - 24475292
Alignment:
Q  198 cccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||||||| |||||| | || ||||||| |||||||    
T  24475244 cccctaactttcaaaaacttgtaatttttgccccctaagtataaaaact 24475292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 8388466 - 8388546
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccct 262  Q
    |||||||||||||| |||||||||||| ||||| |||||||||||| || ||| ||||||||||| | |||||| ||||||    
T  8388466 ctaaagtgcactttcccccctaacttttaaaaagttgcaattttagccccctatgtacaaaaactataattttggccccct 8388546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 12353458 - 12353396
Alignment:
Q  182 ctaaagtgcacttttccccct-aactttcaaaaacttgcaattttagtcctctaagtacaaaa 243  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| | || ||||||||||||    
T  12353458 ctaaagtgcacttttcccccttaactttcaaaaacttgcaattttggccccctaagtacaaaa 12353396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 5513984 - 5514049
Alignment:
Q  182 ctaaagtgcactttt-ccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||| | || |||||||||||||||    
T  5513984 ctaaagtgcacttttaccccctaactttcaaaaacttccaattttggccccctaagtacaaaaact 5514049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 1824174 - 1824111
Alignment:
Q  185 aagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||| ||||||||||  ||||||||||||||||||||||| |||| |||||||||||||||    
T  1824174 aagtgcatttttccccctctaactttcaaaaacttgcaattttggtcccctaagtacaaaaact 1824111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 1858619 - 1858556
Alignment:
Q  185 aagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||| ||||||||||  ||||||||||||||||||||||| |||| |||||||||||||||    
T  1858619 aagtgcatttttccccctctaactttcaaaaacttgcaattttggtcccctaagtacaaaaact 1858556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 29968434 - 29968370
Alignment:
Q  183 taaagtgcacttttccccct-aactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||||| |||||| |||||||||||||||| | || |||||||||||||||    
T  29968434 taaagtgcacttttcccccttaacttttaaaaacttgcaattttggccccctaagtacaaaaact 29968370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 23170096 - 23170034
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaa 244  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||  ||| |||||||||||||    
T  23170096 ctaaagtgcattttcccccctaattttcaaaaacttgcaattttgatcccctaagtacaaaaa 23170034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 32207422 - 32207358
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    | |||||||||||||||    
T  32207422 ctaaagtgcactttcccccctaaccttcaaaaacttgcaattttgacgccctaagtacaaaaact 32207358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 43661919 - 43661856
Alignment:
Q  185 aagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||| ||  ||||||||||||| ||||||||||| ||||||| |||||||||||    
T  43661919 aagtgcacttttccacccttaactttcaaaaagttgcaattttaatcctctatgtacaaaaact 43661856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 10006346 - 10006404
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagta 238  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| | || |||||||    
T  10006346 ctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagta 10006404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 10007862 - 10007804
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagta 238  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| | || |||||||    
T  10007862 ctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagta 10007804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 22221463 - 22221381
Alignment:
Q  182 ctaaagtgcacttttcc--ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccct 262  Q
    |||||||||||||||||  |||||||||||||||||||||||||||   || |||||||  ||||||   |||||||||||||    
T  22221463 ctaaagtgcacttttccacccctaactttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgaccccct 22221381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 22227805 - 22227723
Alignment:
Q  182 ctaaagtgcacttttcc--ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccct 262  Q
    |||||||||||||||||  |||||||||||||||||||||||||||   || |||||||  ||||||   |||||||||||||    
T  22227805 ctaaagtgcacttttccacccctaactttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgaccccct 22227723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 5003195 - 5003133
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaa 244  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||  || |||||||| ||||    
T  5003195 ctaaagcgcactttcccccctaactttcaaaatcttgcaattttaaacccctaagtactaaaa 5003133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 5514368 - 5514303
Alignment:
Q  182 ctaaagtgcacttttc-cccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||  ||||||| ||| |||||||||||||||||| | ||||| ||||||||||    
T  5514368 ctaaagtgcacttttatcccctaattttaaaaaacttgcaattttagccttctaaatacaaaaact 5514303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 45112875 - 45112935
Alignment:
Q  184 aaagtgcacttttcc-ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaa 244  Q
    |||||||| |||||| |||||||||||||||| ||| ||||||||| |||||||||||||||    
T  45112875 aaagtgcatttttcctccctaactttcaaaaatttgtaattttagt-ctctaagtacaaaaa 45112935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 18970920 - 18970992
Alignment:
Q  189 gcacttttcccc-ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgacccc 260  Q
    |||||||||||| ||||||||||||| ||| ||||||| | || |||||||||||||||   |||||||||||    
T  18970920 gcacttttcccccctaactttcaaaatctttcaattttggccccctaagtacaaaaactacaattttgacccc 18970992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 45114612 - 45114549
Alignment:
Q  185 aagtgcacttttcc--ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||  ||||||||||||||||||||||||||| || | ||| ||||| |||||    
T  45114612 aagtgcacttttccgcccctaactttcaaaaacttgcaattttggttcactatgtacacaaact 45114549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 1823554 - 1823620
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||| |||||| ||||  ||||||| ||||||||||||||||   ||||||||||||||||||    
T  1823554 ctaaagtgtactttttcccccttaacttttaaaaacttgcaattttgaccctctaagtacaaaaact 1823620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 1857999 - 1858065
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||| |||||| ||||  ||||||| ||||||||||||||||   ||||||||||||||||||    
T  1857999 ctaaagtgtactttttcccccttaacttttaaaaacttgcaattttgaccctctaagtacaaaaact 1858065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 12351923 - 12352005
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccct 262  Q
    |||||||||| ||| |||||  ||||||||||||| ||||||||||   || |||||||||||||||   |||||||||||||    
T  12351923 ctaaagtgcattttcccccccttaactttcaaaaatttgcaattttgaccccctaagtacaaaaactacaattttgaccccct 12352005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 18979219 - 18979153
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||||||  |||||||||| ||||||||||||| | || |||| || |||||||    
T  18979219 ctaaagtgcacttttccccccctaactttcaacaacttgcaattttggccccctaaatataaaaact 18979153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 30336600 - 30336534
Alignment:
Q  182 ctaaagtgcactttt--ccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||| |  |||||||||||||||||||||  |||||||| |  |||||||||||||||    
T  30336600 ctaaagtgcacttcttcccccctaactttcaaaaacttataattttagcctcctaagtacaaaaact 30336534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 11287779 - 11287844
Alignment:
Q  183 taaagtgcacttttcc--ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||| |  |||||||||| |||||||||||||||| | || ||||||||| |||||    
T  11287779 taaagtgcactttttcacccctaactttaaaaaacttgcaattttggcccactaagtacagaaact 11287844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 11288959 - 11288914
Alignment:
Q  182 ctaaagtgcacttttcc--ccctaactttcaaaaacttgcaatttt 225  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||    
T  11288959 ctaaagtgcactttttcacccctaactttcaaaaacttgcaatttt 11288914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 18978029 - 18978087
Alignment:
Q  189 gcacttttcccc-ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||| ||||||||||||| ||| ||||||| | || |||||||||||||||    
T  18978029 gcacttttcccccctaactttcaaaatctttcaattttggccccctaagtacaaaaact 18978087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 24483145 - 24483190
Alignment:
Q  182 ctaaagtgcacttttcccc--ctaactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||||||  |||| ||||||||||||||||||||    
T  24483145 ctaaagtgcacttttcccctcctaattttcaaaaacttgcaatttt 24483190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 24122885 - 24122950
Alignment:
Q  182 ctaaagtgcacttttcccc-ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||| |||||||| |||||||| ||||| ||||||||||   || |||||||||||||||    
T  24122885 ctaaagtgcatttttcccccctaactttaaaaaatttgcaattttgaccccctaagtacaaaaact 24122950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 24488761 - 24488733
Alignment:
Q  197 ccccctaactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||||||||||||||||    
T  24488761 ccccctaactttcaaaaacttgcaatttt 24488733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 127339 - 127403
Alignment:
Q  182 ctaaagtgcacttttcccc-ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||| |||||    
T  127339 ctaaagtgcacttttcccccctaactttcaaaaacttgcaattttggtcccctaagtaccaaaac 127403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 7500457 - 7500514
Alignment:
Q  182 ctaaagtgcacttttccccct-aactttcaaaaacttgcaattttagtcctctaagta 238  Q
    ||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||    
T  7500457 ctaaagtgcacttttcccccttaactttcaaaaacttgcaattttgatcctctaagta 7500514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 11662649 - 11662569
Alignment:
Q  183 taaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccc 261  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||  ||||| ||||||||||| | |||||| |||||    
T  11662649 taaagtgcatttttccccccttaactttcaaaaacttgcaattttagctctctatgtacaaaaactataattttggccccc 11662569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 18371426 - 18371492
Alignment:
Q  182 ctaaagtgcacttttcccc--ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||||  ||||||||||||||||||||||||| | ||  ||||||||||||||    
T  18371426 ctaaagtgcacttttcccctcctaactttcaaaaacttgcaattttggccccttaagtacaaaaact 18371492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 47525466 - 47525408
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagta 238  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| || |||||||    
T  47525466 ctaaagtgcacttttccccctctaactttcaaaaacttgcaattttagccccctaagta 47525408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 3227693 - 3227628
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| | || |||||||| |||||    
T  3227693 ctaaagtgcacttttccccccctaactttcaaaaacttgcaattttggccccctaagtaccaaaac 3227628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 17782652 - 17782587
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| | || |||||||| |||||    
T  17782652 ctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtaccaaaac 17782587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 47369796 - 47369863
Alignment:
Q  193 ttttccccctaactttcaaaaacttgcaattttagtcctc-taagtacaaaaactgttattttgacccc 260  Q
    |||| |||||||||||||||||||||||||||||| |||| |||||||||||||| | |||||| ||||    
T  47369796 tttttcccctaactttcaaaaacttgcaattttag-cctcataagtacaaaaactataattttggcccc 47369863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 7501951 - 7501893
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagta 238  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| | || |||||||    
T  7501951 ctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagta 7501893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 11658381 - 11658447
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||| ||||||||||||||  |||||||||||||| ||||||||||| || ||| |||||||||||    
T  11658381 ctaaattgcacttttccccccttaactttcaaaaacatgcaattttagccccctatgtacaaaaact 11658447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 17781662 - 17781708
Alignment:
Q  181 actaaagtgcacttttcccc--ctaactttcaaaaacttgcaatttt 225  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||    
T  17781662 actaaagtgcacttttccccccctaactttcaaaaacttgcaatttt 17781708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 21505418 - 21505461
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaacttgcaatttt 225  Q
    ||||||||||||||||||||||||||||||||| |||| |||||    
T  21505418 ctaaagtgcacttttccccctaactttcaaaaagttgcgatttt 21505461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 22630551 - 22630485
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||| |  |||||||||||||||||||||||| | || |||| ||||||||||    
T  22630551 ctaaagtgcacttttccctccataactttcaaaaacttgcaattttggccccctaattacaaaaact 22630485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 48935002 - 48934936
Alignment:
Q  182 ctaaagtgcacttttcc--ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||| ||||||  |||||||||||||||||||| ||||||   ||||||||||||||||||    
T  48935002 ctaaagtgcatttttccacccctaactttcaaaaacttgtaattttgaccctctaagtacaaaaact 48934936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 31949324 - 31949389
Alignment:
Q  182 ctaaagtgcacttttccc--cctaactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||| | || |||||||| |||||    
T  31949324 ctaaagtgcacttttccctccctaattttcaaaaacttgcaattttggccccctaagtaccaaaac 31949389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 18372539 - 18372490
Alignment:
Q  197 ccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||| |||||||||||||||||||| | || |||||||||||||||    
T  18372539 ccccctaattttcaaaaacttgcaattttggccccctaagtacaaaaact 18372490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 31659624 - 31659691
Alignment:
Q  182 ctaaagtgcactttt---ccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||   ||||||||||||||||||||| |||||||   || |||||||||||||||    
T  31659624 ctaaagtgcacttttaccccccctaactttcaaaaacttacaattttgaccccctaagtacaaaaact 31659691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 47524532 - 47524592
Alignment:
Q  187 gtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    ||||||||||||||||  ||||||||||||||||||||||| | || |||||||| |||||    
T  47524532 gtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtaccaaaac 47524592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 3227110 - 3227174
Alignment:
Q  182 ctaaagtgcacttttccccc-taactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    |||||||||||||| ||||| ||| |||||||||||||||||||| | || |||||||| |||||    
T  3227110 ctaaagtgcactttccccccctaattttcaaaaacttgcaattttggccccctaagtaccaaaac 3227174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 34174081 - 34174017
Alignment:
Q  182 ctaaagtgcacttttccccc-taactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    |||||||||||||||||||| || ||||||||| ||||||||||| | || |||||||| |||||    
T  34174081 ctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggccccctaagtaccaaaac 34174017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 20163655 - 20163589
Alignment:
Q  182 ctaaagtgcacttttcc--ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||| |  | ||| |||||||||||    
T  20163655 ctaaagtgcacttctccacccctaactttcaaaaacttgcaattttggctccctatgtacaaaaact 20163589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 21508501 - 21508447
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaag 236  Q
    |||||||||| |||||||| ||||||||||||| || ||||||| | ||||||||    
T  21508501 ctaaagtgcatttttccccttaactttcaaaaagtttcaattttggccctctaag 21508447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 31949901 - 31949856
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaatttt 225  Q
    |||||||||||| |||||||  ||||||||||||||||||||||||    
T  31949901 ctaaagtgcactcttccccccctaactttcaaaaacttgcaatttt 31949856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 61558 - 61476
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccct 262  Q
    ||||||||||||||||| ||  ||| |||||||||||||||||||||| || ||||||||||||||| | |||||| ||||||    
T  61558 ctaaagtgcacttttcctcccttaattttcaaaaacttgcaattttagccccctaagtacaaaaactataattttggccccct 61476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 2563 - 2499
Alignment:
Q  182 ctaaagtgcacttttccccctaactttca-aaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   || ||||||||||||||    
T  2563 ctaaagtgcacttttccccctaactttcaaaaaacttgcaattttgaccccctaagtacaaaaac 2499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 7186 - 7122
Alignment:
Q  182 ctaaagtgcacttttccccctaactttca-aaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    ||||||||||||||||||||||||||||| |||||||||||||||   || ||||||||||||||    
T  7186 ctaaagtgcacttttccccctaactttcaaaaaacttgcaattttgaccccctaagtacaaaaac 7122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 11437298 - 11437232
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||| ||||  ||||||||||||||    
T  11437298 ctaaagtgcactttttcccccttaactttcaaaaacttgcaattttggtcccttaagtacaaaaact 11437232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 45150068 - 45150005
Alignment:
Q  183 taaagtgcacttttccccc-taactttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    ||||||||||||||||||| |||||||||||||||||||||||| | ||  |||||||||||||    
T  45150068 taaagtgcacttttcccccctaactttcaaaaacttgcaattttggccccttaagtacaaaaac 45150005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 51685864 - 51685782
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccct 262  Q
    |||||||||||||||||||||  |||||||||||| |||| ||||| | |||||| |||||||||||   |||||||||||||    
T  51685864 ctaaagtgcacttttccccctctaactttcaaaaagttgcgattttggccctctatgtacaaaaactacaattttgaccccct 51685782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 52274970 - 52275036
Alignment:
Q  182 ctaaagtgcactttt--ccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||  |||||||||||||||||||||||||||||   || |||||||||||||||    
T  52274970 ctaaagtgcacttttacccccctaactttcaaaaacttgcaattttgaccccctaagtacaaaaact 52275036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 24426173 - 24426108
Alignment:
Q  183 taaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||| | || |||||||||||||||    
T  24426173 taaagtgcactttcccccctctaactttcaaaaacttgcaattttggccccctaagtacaaaaact 24426108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 14999287 - 14999352
Alignment:
Q  182 ctaaagtgcacttttcccc-ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||| |||||||||| |||||||||||||||||||||||||   || |||||||||||||||    
T  14999287 ctaaagtgtacttttcccccctaactttcaaaaacttgcaattttgaccccctaagtacaaaaact 14999352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 23980565 - 23980490
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttg 255  Q
    |||||||||||||||||||||  |||||| |||||||||||||||| |  | ||||||||||||||| | ||||||    
T  23980565 ctaaagtgcacttttccccctctaactttaaaaaacttgcaattttggctccctaagtacaaaaactataattttg 23980490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 41364831 - 41364875
Alignment:
Q  182 ctaaagtgcacttttc-cccctaactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  41364831 ctaaagtgcacttttctcccctaactttcaaaaacttgcaatttt 41364875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 44404466 - 44404526
Alignment:
Q  202 taactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccct 262  Q
    ||||||||||||||| |||||||||| || ||||||||||||||| | |||||| ||||||    
T  44404466 taactttcaaaaactagcaattttagccccctaagtacaaaaactataattttggccccct 44404526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 11436044 - 11436110
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| | | | |||||| |||||||    
T  11436044 ctaaagtgcacttttccccctttaactttcaaaaacttgcaattttggccttttaagtataaaaact 11436110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 24422802 - 24422868
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||||   || |||||||||||||||    
T  24422802 ctaaagtgcacttttacccccttaactttcaaaaacttgcaattttgaccccctaagtacaaaaact 24422868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 36614003 - 36613921
Alignment:
Q  182 ctaaagtgcacttttcc--ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccct 262  Q
    |||||||||| ||||||  |||||||||| ||||||||| |||||| | || |||||||||||||||   |||||||||||||    
T  36614003 ctaaagtgcatttttcctcccctaacttttaaaaacttgtaattttggccccctaagtacaaaaactacaattttgaccccct 36613921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 35594219 - 35594264
Alignment:
Q  182 ctaaagtgcacttttcc--ccctaactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  35594219 ctaaagtgcacttttccacccctaactttcaaaaacttgcaatttt 35594264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 45157307 - 45157229
Alignment:
Q  182 ctaaagtgcacttttccccc-taactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccc 259  Q
    |||||||||||||| ||||| ||| |||||||||||||||||||| | || ||| |||||||||||   ||||||||||    
T  45157307 ctaaagtgcactttccccccctaagtttcaaaaacttgcaattttggccccctatgtacaaaaactacaattttgaccc 45157229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 52827349 - 52827394
Alignment:
Q  182 ctaaagtgcacttttcccc--ctaactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||||||  |||||||||||||||||||||||||    
T  52827349 ctaaagtgcacttttccccccctaactttcaaaaacttgcaatttt 52827394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 7674530 - 7674594
Alignment:
Q  182 ctaaagtgcacttttcccc-ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||| ||||||||| |||||||| |||||||||||||||| | || |||||||||||||||    
T  7674530 ctaaagtgcccttttcccccctaacttttaaaaacttgcaattttgggcc-ctaagtacaaaaact 7674594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 39222573 - 39222506
Alignment:
Q  182 ctaaagtgcacttttccccc---taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||| ||||   |||||||||||||||||||||||| | || ||||||| |||||||    
T  39222573 ctaaagtgcacttttaccccctttaactttcaaaaacttgcaattttggccccctaagtataaaaact 39222506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 39699865 - 39699800
Alignment:
Q  182 ctaaagtgcacttttccccc-taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||||| |||||||||| |||||||||||||   || ||||||||| |||||    
T  39699865 ctaaagtgcacttttcccccctaactttcaataacttgcaattttgaccccctaagtacagaaact 39699800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 43058800 - 43058853
Alignment:
Q  193 ttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||| ||||||||||||||||   || |||||||||||||||    
T  43058800 ttttccccctaactttgaaaaacttgcaattttgaccccctaagtacaaaaact 43058853  T

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Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 46066530 - 46066591
Alignment:
Q  185 aagtgcacttttccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||| ||||||||||||||| |||| ||||||| ||  || |||||||||||    
T  46066530 aagtgcacttttcctcctaactttcaaaaagttgcgattttagccccttatgtacaaaaact 46066591  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 41366229 - 41366182
Alignment:
Q  182 ctaaagtgcacttttcccc--ctaactttcaaaaacttgcaattttag 227  Q
    |||||||||||||||||||  ||||||||||||||| |||||||||||    
T  41366229 ctaaagtgcacttttcccctcctaactttcaaaaacatgcaattttag 41366182  T

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Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 50680335 - 50680399
Alignment:
Q  183 taaagtgcacttttccccct-aactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||| | || ||||||| |||||||    
T  50680335 taaagtgcatttttcccccttaacttccaaaaacttgcaattttggccccctaagtataaaaact 50680399  T

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Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 33088716 - 33088650
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||| ||  ||| |||||||||||||||||||   ||| ||||||||||||||    
T  33088716 ctaaagtgcacttttccctctctaacattcaaaaacttgcaattttgaccctttaagtacaaaaact 33088650  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 43378810 - 43378748
Alignment:
Q  183 taaagtgcacttttccccct-aactttcaaaaacttgcaattttagtcctctaagtacaaaaa 244  Q
    ||||||||||||||| | || ||||||||||||||| |||||||  ||| |||||||||||||    
T  43378810 taaagtgcacttttctctcttaactttcaaaaacttacaattttgatcccctaagtacaaaaa 43378748  T

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Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 52276261 - 52276196
Alignment:
Q  183 taaagtgcacttttcccc--ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||| ||||  |||||||||||||| ||| |||||| | || |||||||||||||||    
T  52276261 taaagtgcactttcccccttctaactttcaaaaatttgtaattttggccccctaagtacaaaaact 52276196  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 7987952 - 7987911
Alignment:
Q  184 aaagtgcacttttccccctaactttcaaaaacttgcaatttt 225  Q
    |||||||| |||||||||||||||||||||| || |||||||    
T  7987952 aaagtgcatttttccccctaactttcaaaaatttacaatttt 7987911  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 37526975 - 37526931
Alignment:
Q  183 taaagtgcacttttccccc--taactttcaaaaacttgcaatttt 225  Q
    ||||||| |||||||||||  ||||||||||||||||||||||||    
T  37526975 taaagtgtacttttccccccttaactttcaaaaacttgcaatttt 37526931  T

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Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 44412032 - 44411999
Alignment:
Q  213 aacttgcaattttagtcctctaagtacaaaaact 246  Q
    |||||||||||||||||| |||||||||||||||    
T  44412032 aacttgcaattttagtcccctaagtacaaaaact 44411999  T

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Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 52828168 - 52828124
Alignment:
Q  183 taaagtgcacttttccccct--aactttcaaaaacttgcaatttt 225  Q
    ||||||||||||||||||||  || ||||||||||||||||||||    
T  52828168 taaagtgcacttttccccctctaattttcaaaaacttgcaatttt 52828124  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 15000035 - 14999991
Alignment:
Q  199 ccctaactttcaaaaacttgcaattttagtcctctaagtacaaaa 243  Q
    |||||||||| ||||||||||||||||  ||| ||||||||||||    
T  15000035 ccctaacttttaaaaacttgcaattttgatcccctaagtacaaaa 14999991  T

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Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 39698565 - 39698640
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttg 255  Q
    |||||||||||||| |||||  ||||||| |||||||| ||||||| | || ||||||||| ||||| | ||||||    
T  39698565 ctaaagtgcactttaccccccttaacttttaaaaactttcaattttggccccctaagtacagaaactataattttg 39698640  T

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Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 45148583 - 45148646
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaa 243  Q
    ||||||||||||||| |||   |||||||||||||||||||||||| | || ||||||| ||||    
T  45148583 ctaaagtgcactttttcccgcttaactttcaaaaacttgcaattttggccccctaagtaaaaaa 45148646  T

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Target: scaffold2034 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 235 - 310
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttg 255  Q
    |||||||||||||| |||||  ||||||||||||| |||||||||| |||| ||| ||||||||||| | ||||||    
T  235 ctaaagtgcactttcccccccttaactttcaaaaagttgcaattttggtcccctatgtacaaaaactataattttg 310  T

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Target: scaffold0302 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 17472 - 17538
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||| ||||  ||||||| |||||||||||||||| | || |||||||||||||||    
T  17472 ctaaagtgcactttttcccccttaacttttaaaaacttgcaattttggccccctaagtacaaaaact 17538  T

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Target: scaffold0302; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 18875 - 18795
Alignment:
Q  182 ctaaagtgcacttttcccc--ctaactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgacccc 260  Q
    ||||||||||||||| |||  |||||||| ||||| |||||||||| |||| ||| ||||||||||| | |||||| ||||    
T  18875 ctaaagtgcactttttccctcctaacttttaaaaatttgcaattttggtcccctaggtacaaaaactataattttggcccc 18795  T

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Target: scaffold1303 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 1441 - 1523
Alignment:
Q  182 ctaaagtgcacttttccccct--aactttcaaaaacttgcaattttagtcctctaagtacaaaaactgttattttgaccccct 262  Q
    |||||||| ||||||||||||  |||||| ||||||||||||||||   || ||| ||| ||||||| | |||||||||||||    
T  1441 ctaaagtgtacttttccccctctaactttaaaaaacttgcaattttgaccccctatgtataaaaactataattttgaccccct 1523  T

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Target: scaffold0294 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 5537 - 5471
Alignment:
Q  182 ctaaagtgcacttttccccc--taactttcaaaaacttgcaattttagtcctctaagtacaaaaact 246  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||   ||  ||||||||||||||    
T  5537 ctaaagtgcacttttccccccctaattttcaaaaacttgcaattttgaccccttaagtacaaaaact 5471  T

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Target: scaffold0294; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 4444 - 4508
Alignment:
Q  182 ctaaagtgcactttt--ccccctaactttcaaaaacttgcaattttagtcctctaagtacaaaaa 244  Q
    ||||||||||| |||  |||||||| |||||||||||| ||||||||| ||  ||||||||||||    
T  4444 ctaaagtgcacattttcccccctaattttcaaaaacttacaattttagccccttaagtacaaaaa 4508  T

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Target: scaffold0632 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 3406 - 3362
Alignment:
Q  182 ctaaagtgcacttttccccc-taactttcaaaaacttgcaatttt 225  Q
    |||||||||||||||||||| | |||||||||||||| |||||||    
T  3406 ctaaagtgcacttttccccccttactttcaaaaacttacaatttt 3362  T

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Target: scaffold0369 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 13195 - 13227
Alignment:
Q  182 ctaaagtgcacttttccccctaactttcaaaaa 214  Q
    ||||||||||||||||||||||||||| |||||    
T  13195 ctaaagtgcacttttccccctaactttgaaaaa 13227  T

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Target: scaffold0112 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 37150 - 37214
Alignment:
Q  182 ctaaagtgcacttttccccctaac-tttcaaaaacttgcaattttagtcctctaagtacaaaaac 245  Q
    |||||||||||||||||||||| | ||| ||||| ||||||||||   || ||||||||||||||    
T  37150 ctaaagtgcacttttccccctatcttttaaaaaatttgcaattttgaccccctaagtacaaaaac 37214  T

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Target: scaffold0059 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 3690 - 3722
Alignment:
Q  193 ttttccccctaactttcaaaaacttgcaatttt 225  Q
    |||| ||||||||||||||||||||||||||||    
T  3690 tttttcccctaactttcaaaaacttgcaatttt 3722  T

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