View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9895_low_9 (Length: 250)
Name: NF9895_low_9
Description: NF9895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9895_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 233
Target Start/End: Complemental strand, 23937846 - 23937632
Alignment:
| Q |
22 |
atgaagatgaaggttatggtggcaatagatgagagtgatggaagcttgtatgctcttaagtgggcccttgataatctcttcaacattatgactactaata |
121 |
Q |
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| T |
23937846 |
atgaagatgaaggtgatggtggcaatagatgagagtgatggaagcttgtatgctcttaagtgggcccttgataacctcttcaacattatggctactgata |
23937747 |
T |
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| Q |
122 |
ctatggaaggaacatcatctgaaa---acgagggaatggtgttccttgttcatgttgagccaaatttccacacttatgcttaccctatacctatgggacc |
218 |
Q |
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| T |
23937746 |
ctatgaatggaacaacatctgaaaatgaggaggggatagtgtttcttgttcatgttgagccaaattttcacacttatgcataccctatacctatgggacc |
23937647 |
T |
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| Q |
219 |
agctggtattggtta |
233 |
Q |
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| T |
23937646 |
agctggtgttggtta |
23937632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 23932133 - 23931955
Alignment:
| Q |
12 |
agagagaaggatgaagatgaaggttatggtggcaatagatgagagtgatggaagcttgtatgctcttaagtgggcccttgataatctcttcaacattatg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
23932133 |
agagagaaggatgaagatgaaggttatggtggcaatagatgaaagtgatggaagcttttatgcccttaagtgggcccttgataatctcttcaacgttatg |
23932034 |
T |
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| Q |
112 |
actactaatactatggaaggaacatcatctgaaaacgagggaatggtgttccttgttcatgttgagccaaatttccacacttatg |
196 |
Q |
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| T |
23932033 |
ac------taccatggaaggaacatcatctgaaaatgagggaatggtgtttcttgttcatgttgaacccattttccacaattatg |
23931955 |
T |
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