View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9896_high_1 (Length: 558)
Name: NF9896_high_1
Description: NF9896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9896_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 16 - 541
Target Start/End: Complemental strand, 27442475 - 27441950
Alignment:
| Q |
16 |
attctaatggggatgataactggaaaaagagcactcgacgacagccgacaagacaatgtcatcaaccttgctgaatggttcatcaaacagtcatttgaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27442475 |
attctaatggggatgataactggaaaaagagcactcgacgacagccaacaagacaatgtcatcaaccttgctgaatggttcatcaaacagtcatttgaaa |
27442376 |
T |
|
| Q |
116 |
atgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaaggagcctaataa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27442375 |
atgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacactgctgtgaaaaggagcctaataa |
27442276 |
T |
|
| Q |
216 |
gcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatggacttg |
315 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27442275 |
gcgtcccgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatggacttg |
27442176 |
T |
|
| Q |
316 |
cctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagcagcatattagaggataccattcaggaatattaggtgcttggaagaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27442175 |
cctatgagtttacctgaagaaatgagcaagtggaagaaccttgaaggaatgagcagcatattagaggataccattcaggaaaattaggtgcttggaagaa |
27442076 |
T |
|
| Q |
416 |
taagaagtagtcaaggacttattttatgataccagttagtgcataatactgcaaggaattcattttgatgattttccctgaatattattttgatgctcat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27442075 |
taagaagtagtcaaggacttattttatgataccagttagtgcataatactgcaaggaattcattttgatgattttccctgaatattattttgatgctcat |
27441976 |
T |
|
| Q |
516 |
aagatgcttagtaaaattcatctctg |
541 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
27441975 |
aagatgcttagtaaaattcatctctg |
27441950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 6e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 106 - 370
Target Start/End: Original strand, 11838064 - 11838328
Alignment:
| Q |
106 |
tcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaagg |
205 |
Q |
| |
|
||||||||||| |||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |||||| || || || |||| || || |
|
|
| T |
11838064 |
tcatttgaaaaggtcattgatccagcaatggacatcgacgaggaaggcttggagagtttcaggactattgcaggattggctagccactgttgtgcaaggg |
11838163 |
T |
|
| Q |
206 |
agcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatgg |
305 |
Q |
| |
|
|||||||| ||| || |||||| || ||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| || |||| |
|
|
| T |
11838164 |
agcctaatcagcgtcctgacatgggacacgtagtgaatgtgctagcaccccttgtcgagatttggaagccggctgaacctgatgttgatgatatatatgg |
11838263 |
T |
|
| Q |
306 |
tatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
370 |
Q |
| |
|
|| |||||| ||||||||| ||| ||| | ||| ||||||| |||| | |||||||||||||| |
|
|
| T |
11838264 |
gattgacttggatatgagtttgcctcaagcactgattaagtggcagaatcatgaaggaatgagca |
11838328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 112 - 370
Target Start/End: Complemental strand, 11855769 - 11855511
Alignment:
| Q |
112 |
gaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaaggagccta |
211 |
Q |
| |
|
||||| |||||||||||||||||| | || ||||||||||||||||||||||||||| ||| ||||||||||||| || ||||||| || ||||||| |
|
|
| T |
11855769 |
gaaaaggtcattgatccagcaatggacatcaacgaggaaggcttggagagtttcaggatcatttcagaattggcaagccactgctgtgcaagggagcctc |
11855670 |
T |
|
| Q |
212 |
ataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatgga |
311 |
Q |
| |
|
|| ||| || ||| ||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| || || |
|
|
| T |
11855669 |
atcagcgtcccgatatgggatacgtagtgaatgtgttagcacctcttgttgagatttggaagccggctgaacctaatgctgatgacatgtatgggattga |
11855570 |
T |
|
| Q |
312 |
cttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
370 |
Q |
| |
|
|||| |||| |||| ||| ||| | |||||||| | |||| |||||||||||||||| |
|
|
| T |
11855569 |
cttgtatatgggtttgcctcaagcaccgagtaagttgcagaatcttgaaggaatgagca |
11855511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 106 - 370
Target Start/End: Original strand, 11850747 - 11851011
Alignment:
| Q |
106 |
tcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaagg |
205 |
Q |
| |
|
||||| ||||| |||||||||||||||||| | || |||||||||||| ||||||||||||||||||| |||| ||||||||| ||||| |||| || || |
|
|
| T |
11850747 |
tcattcgaaaaggtcattgatccagcaatggacatagacgaggaaggcctggagagtttcaggactatggcaggattggcaagccaatgttgtgcaaggg |
11850846 |
T |
|
| Q |
206 |
agcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatgg |
305 |
Q |
| |
|
||||| || ||| || |||||| || | ||||| ||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |||| |
|
|
| T |
11850847 |
agcctcatcagcgtcctgacatgggacatgtagtgaatgtgctagcacctcttgtcgagatttggaagccggctgaacctgaagctgatgacatgtatgg |
11850946 |
T |
|
| Q |
306 |
tatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
370 |
Q |
| |
|
|| |||||| ||| ||||| ||| ||| | | ||||||||| ||| |||||||||| ||||| |
|
|
| T |
11850947 |
gattgacttggatataagttttcctcaaggacttagtaagtggccgaatcttgaaggaacgagca |
11851011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University