View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9896_high_12 (Length: 252)
Name: NF9896_high_12
Description: NF9896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9896_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 37748453 - 37748213
Alignment:
| Q |
1 |
ttttcctccaaactattcata----gtaacaatagctgaaaatatgagtcaatatacagtttcacattgcatgatttagatcttctcacatgtttggata |
96 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37748453 |
ttttcctccaaactattcatatatagtaacaatagctgaaaatatgagtcaatatacagtttcacattgcatgatttagatcttctcacatgtttggata |
37748354 |
T |
|
| Q |
97 |
ataagatatggtcttgtttgacagaaaaaagtatgctgttagagtataagaaattatattaaagtatcttagtttatttcaatatttcttaagatcggtt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37748353 |
ataagatatggtcttgtttgacagaaaaaaggatgctgttagagtataagaaattatattaaagtatcttagtttatttcaatatttcttaagatcagtt |
37748254 |
T |
|
| Q |
197 |
tataatattagaggtttgttacaatttgtagattatttttt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37748253 |
tataatattagaggtttgttacaatttgtagattatttttt |
37748213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University