View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9896_high_5 (Length: 343)
Name: NF9896_high_5
Description: NF9896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9896_high_5 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 335
Target Start/End: Complemental strand, 14873362 - 14873043
Alignment:
| Q |
16 |
gtgagatcatatctagtggttgatattaaacatgctggttttagagaggttgatttcggttggggaaaaccttgttatggaggaccagctaaaggaggag |
115 |
Q |
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| T |
14873362 |
gtgagatcatatctagtggttgatattaaacatgctggttttagagaggttgatttcggttggggaaaaccttgttatggaggaccagctaaaggaggag |
14873263 |
T |
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| Q |
116 |
ttgtttctagttcgtatataccttttaaaaatgctaaaggaatagaaggtttggttataccagtttgtttgccaactaaagccatggagaggttcattaa |
215 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14873262 |
ttgtttctagttcgtatataccatttaaaaatgctaaaggaatagaaggtttggttataccagtttgtttgccaactaaagccatggagaggttcattaa |
14873163 |
T |
|
| Q |
216 |
agagttggatggtgtgcttaagaacaaaattaaccaacctactatgggtggtccaaaacctagattcataatttctcccttgtaaaccttgaactaatgt |
315 |
Q |
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| T |
14873162 |
agagttggatggtgtgcttaagaacaaaattaaccaacctactatgggtggtccaaaacctagattcataatttctcccttgtaaaccttgaactaatgt |
14873063 |
T |
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| Q |
316 |
tcgtatgaatttcctttgct |
335 |
Q |
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|||||||||||||||||||| |
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| T |
14873062 |
tcgtatgaatttcctttgct |
14873043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 130 - 335
Target Start/End: Complemental strand, 14767041 - 14766836
Alignment:
| Q |
130 |
tatataccttttaaaaatgctaaaggaatagaaggtttggttataccagtttgtttgccaactaaagccatggagaggttcattaaagagttggatggtg |
229 |
Q |
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| T |
14767041 |
tatatacctttcaaaaatgctaaaggagaggaaggtttggttataccactttgtttaccagctcaagccatggagaagttcgttaaagagttagatagtg |
14766942 |
T |
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| Q |
230 |
tgcttaagaacaaaattaaccaacctactatgggtggtccaaaacctagattcataatttctcccttgtaaaccttgaactaatgttcgtatgaatttcc |
329 |
Q |
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||||||||||||| || |||||||||||||| ||||||||||||||||| ||||| |||||| ||||||| ||||| |||||||||| || | ||||||| |
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| T |
14766941 |
tgcttaagaacaacatcaaccaacctactattggtggtccaaaacctagtttcattatttcttccttgtagaccttaaactaatgtttgtttcaatttcc |
14766842 |
T |
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| Q |
330 |
tttgct |
335 |
Q |
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|||||| |
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| T |
14766841 |
tttgct |
14766836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 14877948 - 14877844
Alignment:
| Q |
161 |
aaggtttggttataccagtttgtttgccaactaaagccatggagaggttcattaaagagttggatggtgtgcttaagaacaaaattaaccaacctactat |
260 |
Q |
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||||||||||||||||||||| |||||||||| ||| |||||||||||| |||||||||||||| |||| ||||||||||| |||||||| ||||||| |
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| T |
14877948 |
aaggtttggttataccagtttttttgccaactcaagtcatggagaggttggttaaagagttggatagtgttcttaagaacaacattaaccagcctactaa |
14877849 |
T |
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| Q |
261 |
gggtg |
265 |
Q |
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||||| |
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| T |
14877848 |
gggtg |
14877844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 14786123 - 14786016
Alignment:
| Q |
131 |
atataccttttaaaaatgctaaaggaatagaaggtttggttataccagtttgtttgccaactaaagccatggagaggttcattaaagagttggatggtgt |
230 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||| ||| ||| |||| | ||| |||||||||||| ||||||| ||||| |||| |
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| T |
14786123 |
atatacctttcaaaaatgctaaaggagaggaaggtttggttataccattttattttccaaatcaagtcatggagaggtttgttaaagaaatggatagtgt |
14786024 |
T |
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| Q |
231 |
gcttaaga |
238 |
Q |
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|||||||| |
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| T |
14786023 |
gcttaaga |
14786016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 14759762 - 14759852
Alignment:
| Q |
131 |
atataccttttaaaaatgctaaaggaatagaaggtttggttataccagtttgtttgccaactaaagccatggagaggttcattaaagagtt |
221 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||| ||| ||||| || ||| |||||||||||| |||||||||| |
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| T |
14759762 |
atatacctttcaaaaatgctaaaggagaagaaggtttggttataccgtttttcttgcctgctcaagtcatggagaggttggttaaagagtt |
14759852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 14872305 - 14872228
Alignment:
| Q |
228 |
tgtgcttaagaacaaaattaaccaacctactatgggtggtccaaaacctagattcataatttctcccttgtaaacctt |
305 |
Q |
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| T |
14872305 |
tgtgcttaagaacaacattagccaacctactaaggatggtccgaaacctagtctcgttatttcttcattgtaaacctt |
14872228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 14878075 - 14878011
Alignment:
| Q |
49 |
gctggttttagagaggttgatttcggttggggaaaaccttgttatggaggaccagctaaaggagg |
113 |
Q |
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||||| ||| |||| |||||||| |||||||| ||| || |||||||||||||||||||||||| |
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| T |
14878075 |
gctggatttcgagatgttgattttggttgggggaaagctgtttatggaggaccagctaaaggagg |
14878011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 265
Target Start/End: Complemental strand, 84039 - 83904
Alignment:
| Q |
130 |
tatataccttttaaaaatgctaaaggaatagaaggtttggttataccagtttgtttgccaactaaagccatggagaggttcattaaagagttggatggtg |
229 |
Q |
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| T |
84039 |
tatataccttttaaaaatgctaaaggagaggaaggttttgttataccagttttttttccaactcaagtcatcgagaggttggttaaagagttggataaag |
83940 |
T |
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| Q |
230 |
tgcttaagaacaaaattaaccaacctactatgggtg |
265 |
Q |
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| T |
83939 |
ttcttaagaacaacattaactcgcctactatgggtg |
83904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 11999728 - 11999661
Alignment:
| Q |
48 |
tgctggttttagagaggttgatttcggttggggaaaaccttgttatggaggaccagctaaaggaggag |
115 |
Q |
| |
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|||||| |||||||| ||||| || |||||||| |||||| ||||||||||||||||||||||||| |
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| T |
11999728 |
tgctggatttagagatgttgagtttggttgggggaaacctgtgtatggaggaccagctaaaggaggag |
11999661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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