View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9896_high_8 (Length: 286)
Name: NF9896_high_8
Description: NF9896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9896_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 47001380 - 47001125
Alignment:
| Q |
12 |
agagatggtgtaagtttatttcggcggaataaaaatgaaacttagaactaatagtaatgtaactaaccagtgtttgtattgcagaaaagattccaattgt |
111 |
Q |
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| T |
47001380 |
agagatggtgtaagtttatttcggcggaatataaatgaaacttagaactaatagtaatgtaactaaccagtgtttgtattgcagaaaagattccaattgt |
47001281 |
T |
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| Q |
112 |
tttatatcttccaaggaaggaatctgctagaaaacctccaagcaaacaaaggagaaatgatgtgcccatgaagtcagtcacagtattagctgcagttgaa |
211 |
Q |
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| T |
47001280 |
tttatatcttccaaggaaggaatctgctagaaaacctccaagcaaacaaaggagaaatgatgtgcccatgaagtcagtcacagtattagctgcagttgaa |
47001181 |
T |
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| Q |
212 |
cttggcatatgcatgactcccatcagatatgtcaccaaattgactgcaatccccat |
267 |
Q |
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| T |
47001180 |
cttggcatatgcatgactcccatcagatatgtcaccaaattgactgcaatccccat |
47001125 |
T |
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