View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9896_low_1 (Length: 601)
Name: NF9896_low_1
Description: NF9896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9896_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 1e-95; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 27080788 - 27080984
Alignment:
| Q |
13 |
caaaggcataaattatcttctacatcaaaattggcatgtctgcatcacccacactctctgagaagaaaataattgtaatcattttcttgctaagctatgc |
112 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27080788 |
caaaggcataaaaaatctt-tacatcaaaattggcatgtctgcatcacccacactgtctgagaagaaaataattgtaatcattttcttgctaagctatgc |
27080886 |
T |
|
| Q |
113 |
gcttcttccaatattggtctcatggtccatcaaactcctctaataagtctctttaacctcctctactcggattctatacctatttcgatataatatag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27080887 |
gcttcttccaatattggtctcatggtccatcaaactcctctaataagtctctttaacctcctctactcggattctatacctatttcgatataatatag |
27080984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 27148869 - 27148673
Alignment:
| Q |
13 |
caaaggcataaattatcttctacatcaaaattggcatgtctgcatcacccacactctctgagaagaaaataattgtaatcattttcttgctaagctatgc |
112 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27148869 |
caaaggcataaaaaatctt-tacatcaaaattggcatgtctgcatcacccacactgtctgagaagaaaataattgtaatcattttcttgctaagctatgc |
27148771 |
T |
|
| Q |
113 |
gcttcttccaatattggtctcatggtccatcaaactcctctaataagtctctttaacctcctctactcggattctatacctatttcgatataatatag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27148770 |
gcttcttccaatattggtctcatggtccatcaaactcctctaataagtctctttaacctcctctactcggattctatacctatttcgatataatatag |
27148673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 404 - 583
Target Start/End: Original strand, 27081100 - 27081275
Alignment:
| Q |
404 |
gcaattattcgatccttataaacactacccttcttctctttctactcacacaccacaataccaatggagttcattctacaatatgttgagccttcaactc |
503 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27081100 |
gcaattatttgatccttataaacacttcccttcttctct----actcacacaccacaataccaatggagttcattctgcaatatgttgagccttcaactc |
27081195 |
T |
|
| Q |
504 |
ttatttttcttctcatctctctggcaacttatgttgtcttctcacttggcctccatagnnnnnnnctcccatacccacca |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27081196 |
ttatttttcttctcatctctctggcaacttatgttgtcttctcacttggcctccatagaaaaaaactcccatacccacca |
27081275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 404 - 583
Target Start/End: Complemental strand, 27148557 - 27148382
Alignment:
| Q |
404 |
gcaattattcgatccttataaacactacccttcttctctttctactcacacaccacaataccaatggagttcattctacaatatgttgagccttcaactc |
503 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27148557 |
gcaattatttgatccttataaacacttcccttcttctct----actcacacaccacaataccaatggagttcattctgcaatatgttgagccttcaactc |
27148462 |
T |
|
| Q |
504 |
ttatttttcttctcatctctctggcaacttatgttgtcttctcacttggcctccatagnnnnnnnctcccatacccacca |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27148461 |
ttatttttcttctcatctctctggcaacttatgttgtcttctcacttggcctccatagaaaaaaactcccatacccacca |
27148382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 27080999 - 27081039
Alignment:
| Q |
302 |
atttatactttcctcttttacgttttgtcctttagctttgt |
342 |
Q |
| |
|
|||| ||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
27080999 |
atttttactttccttttttactttttgtcctttagctttgt |
27081039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 27148658 - 27148618
Alignment:
| Q |
302 |
atttatactttcctcttttacgttttgtcctttagctttgt |
342 |
Q |
| |
|
|||| ||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
27148658 |
atttttactttccttttttactttttgtcctttagctttgt |
27148618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University