View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9896_low_10 (Length: 289)

Name: NF9896_low_10
Description: NF9896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9896_low_10
NF9896_low_10
[»] chr5 (2 HSPs)
chr5 (99-274)||(3341738-3341913)
chr5 (99-274)||(3358647-3358822)
[»] chr2 (6 HSPs)
chr2 (99-274)||(21647753-21647928)
chr2 (99-274)||(29982640-29982815)
chr2 (99-274)||(37644894-37645069)
chr2 (99-274)||(15321966-15322141)
chr2 (1-101)||(20979662-20979762)
chr2 (1-60)||(20966891-20966950)
[»] chr1 (5 HSPs)
chr1 (99-274)||(9087842-9088017)
chr1 (99-274)||(32516963-32517138)
chr1 (99-274)||(45881244-45881419)
chr1 (99-274)||(35813445-35813620)
chr1 (99-274)||(2315890-2316058)
[»] chr8 (2 HSPs)
chr8 (99-274)||(5157387-5157562)
chr8 (99-274)||(39774054-39774229)
[»] chr7 (1 HSPs)
chr7 (99-274)||(7331600-7331775)
[»] chr4 (2 HSPs)
chr4 (99-274)||(29379875-29380050)
chr4 (99-274)||(2519709-2519883)
[»] chr6 (1 HSPs)
chr6 (99-274)||(26275916-26276091)
[»] scaffold0181 (1 HSPs)
scaffold0181 (99-274)||(17798-17973)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 99 - 274
Target Start/End: Original strand, 3341738 - 3341913
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
3341738 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatatagtggaaaacgtgacaagatccttaactccgttcaat 3341837  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
3341838 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgcagat 3341913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 99 - 274
Target Start/End: Original strand, 3358647 - 3358822
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
3358647 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatatagtggaaaacgtgacaagatccttaactccgttcaat 3358746  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
3358747 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgcagat 3358822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 99 - 274
Target Start/End: Original strand, 21647753 - 21647928
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
21647753 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatatagtggaaaacgtgacaagatccttaactccgttcaat 21647852  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
21647853 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgcagat 21647928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 99 - 274
Target Start/End: Complemental strand, 29982815 - 29982640
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
29982815 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttccatatagtggaaaacgtgacaagatccttaactccgttcaat 29982716  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
29982715 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgcagat 29982640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 99 - 274
Target Start/End: Complemental strand, 37645069 - 37644894
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
37645069 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttccatatagtggaaaacgtgacaagatccttaactccgttcaat 37644970  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
37644969 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgcagat 37644894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 99 - 274
Target Start/End: Original strand, 15321966 - 15322141
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
15321966 aactacaggtgtgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatatagtggaaaacgtgacaagatccttaactccgtccaat 15322065  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
15322066 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgcagat 15322141  T

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Target: chr2; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 20979762 - 20979662
Alignment:
1 atgagatcatcggggaggatcaatgacgacggcacgttggctttacccggcgaattagatagaaggttagtcatctgaactgctactttgtgaaccctaa 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
20979762 atgagatcgtcggggaggatcaatgacgacggcacgttggctttacgcggcgaattagatagaaggttggtcatctgaactgcaactttgtgaaccctaa 20979663  T
101 c 101  Q
    |    
20979662 c 20979662  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 20966950 - 20966891
Alignment:
1 atgagatcatcggggaggatcaatgacgacggcacgttggctttacccggcgaattagat 60  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||  ||||||||||||    
20966950 atgagatcgtccgggaggatcaatgacgacggcactttggctttacgtggcgaattagat 20966891  T

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Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 99 - 274
Target Start/End: Original strand, 9087842 - 9088017
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
9087842 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatatagtggaaaacgtgacaagatccttaactccgttcaat 9087941  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
9087942 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgcagat 9088017  T

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Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 99 - 274
Target Start/End: Original strand, 32516963 - 32517138
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
32516963 aactacatgtatgaaattatcagatggtttaccgaggtccaaatcttctataagtttgcatatagtggaaaacgtgacaagatccttaactccgttcaat 32517062  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
32517063 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgcagat 32517138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 99 - 274
Target Start/End: Complemental strand, 45881419 - 45881244
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
45881419 aactacatgtatgaaattatcagatggtttaccagggtccaaatcttctataagtttgcatatagtggaaaacgtgacaagatccttaactccgttcaat 45881320  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
45881319 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgcagat 45881244  T

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Target: chr1; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 99 - 274
Target Start/End: Original strand, 35813445 - 35813620
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
35813445 aactacatgtatgaaattatcagattgtttaccggggtccaaatcttctataagtttgcatatagtggaaaacgtgacaagatccttaactccgttcaat 35813544  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||    
35813545 atggatggtcattggtcaatcttttattgatactaagaatgagagccatgaaactgatgcttcagtcgttgcagat 35813620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 99 - 274
Target Start/End: Complemental strand, 2316058 - 2315890
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    ||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||| |||||||| ||||    
2316058 aactacaggtgtgagattatcagatggtttaccggggtccaaatcttctataagtttgcatatagtggaaaacgcaacaagatcctcaactccgtccaat 2315959  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
    |||||||       |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
2315958 atggatg-------gtcaatcttttattgatactaggaatgagagcaatgaaactgatgcttcagtagttgcagat 2315890  T

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Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 99 - 274
Target Start/End: Original strand, 5157387 - 5157562
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
5157387 aactacatgtatgaaattatcagatggtttatcggggtccaaatcttctataagtttgcatatagtggaaaacgtgacaagatccttaactccgttcaat 5157486  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
5157487 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgcagat 5157562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 99 - 274
Target Start/End: Complemental strand, 39774229 - 39774054
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
39774229 aactacatgtatgaaattatcagattgtttaccggggtccaaatcttctataagtttgcatatagtggaaaacgtgacaagatccttaactccgttcaat 39774130  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
39774129 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgcagat 39774054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 99 - 274
Target Start/End: Complemental strand, 7331775 - 7331600
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
7331775 aactacatgtatgaaattatcagatggtttaccagggtccaaatcttctataagtttgcatatagtggaaaacgtgacaagatccttaactccgttcaat 7331676  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
7331675 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgcagat 7331600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 99 - 274
Target Start/End: Original strand, 29379875 - 29380050
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
29379875 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcacatagtggaaaacgtgacaagatccttaactccgttcaat 29379974  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
29379975 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgcagat 29380050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 99 - 274
Target Start/End: Original strand, 2519709 - 2519883
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
2519709 aactacatgtatgaaattatcagatggtttaccggggttcaaatcttctataagtttgcatatagtggaaaacgtgacaagatccttaactccgttcaat 2519808  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
2519809 atggatggtca-tggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgcagat 2519883  T

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Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 99 - 274
Target Start/End: Complemental strand, 26276091 - 26275916
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
26276091 aactacatgtatgaaattatcagatggtttaccagggtccaaatcttctataagtttgcatatagtggaaaacgtgacaagatccttaactccgttcaat 26275992  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
26275991 atggatggtcattggttaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgcagat 26275916  T

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Target: scaffold0181 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 99 - 274
Target Start/End: Complemental strand, 17973 - 17798
Alignment:
99 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataagtttgcatacagtggaaaacgtgacaagatccttaactccgttcaat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
17973 aactacatgtatgaaattatcagatggtttaccggggtccaaatcttctataaatttgcatatagtggaaaacgtgacaagatccttaactccgttcaat 17874  T
199 atggatggtcattggtcaatcttttattgatactaggaatgagagccatgaaactgatgcttcagtagttgtagat 274  Q
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17873 atggatggtcattggtcgatcttttattgatactaggaatgagagcgatgaaactgatgcttcagtagttgcagat 17798  T

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