View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9896_low_14 (Length: 261)
Name: NF9896_low_14
Description: NF9896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9896_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 12825265 - 12825506
Alignment:
| Q |
19 |
ctacagacagcaaaaaactcctaccacccaacaacggaacagaaccaaaggtagttaaagcagccacgtaaggcattcc-tcggattccaacaccattca |
117 |
Q |
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| T |
12825265 |
ctacagacaccaaaaaaatcctaccacccaacaacggaacagaaccaaaggtagttaaagcagccgcgtaaggcattccctcggattccaacaccattca |
12825364 |
T |
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| Q |
118 |
taatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatccaccgccgagttccgattat |
217 |
Q |
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| T |
12825365 |
taatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacacctttacatcatccaccatttcatccaccgctgagttccgattat |
12825464 |
T |
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| Q |
218 |
taaaaatcttatcattccttgctttccacaacaccaaactcg |
259 |
Q |
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| T |
12825465 |
taaaaatcttatcattccttgctttccacaaaaccaaactcg |
12825506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 103 - 247
Target Start/End: Complemental strand, 35400893 - 35400749
Alignment:
| Q |
103 |
ttccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatccaccg |
202 |
Q |
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| T |
35400893 |
ttccaacaccattcgtaatacatacacggtggcatagagattctatccaaagcccatctccaagacaaaaccttgacatcatccaccatttcacccacat |
35400794 |
T |
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| Q |
203 |
ccgagttccgattattaaaaatcttatcattccttgctttccaca |
247 |
Q |
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| T |
35400793 |
acggatttcggttattaaaaaccttatcattcctcgctttccaca |
35400749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 245
Target Start/End: Complemental strand, 37035710 - 37035552
Alignment:
| Q |
88 |
aaggcattcc-tcggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatcc |
186 |
Q |
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| T |
37035710 |
aaggcattccctcggatcccaacaccactcatagaacatacaaggaggcattgcaattatctccaacgaccaccgccaagtcaataccttaatatcctcc |
37035611 |
T |
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| Q |
187 |
accatttcatccaccgccgagttccgattattaaaaatcttatcattccttgctttcca |
245 |
Q |
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| T |
37035610 |
acaatatccaccacctccggattccgattattaaaaatcttgtcatttctagctttcca |
37035552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 24189660 - 24189605
Alignment:
| Q |
109 |
caccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgcca |
164 |
Q |
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| T |
24189660 |
caccattcatagtacatacacggaggcatagagattctatccaaagaccatcgcca |
24189605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 11780156 - 11780096
Alignment:
| Q |
104 |
tccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgcca |
164 |
Q |
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| T |
11780156 |
tccaaaaccattcatagtacatacacgggggcatagaaattctgtccaaagaccaacgcca |
11780096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 245
Target Start/End: Complemental strand, 47820348 - 47820206
Alignment:
| Q |
100 |
ggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatcca |
199 |
Q |
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| T |
47820348 |
ggattccaacaccactcatagaacatacacggagacattgccattatctccaacgaccaccaccaagtaaccaccttaatatcctccacaat---atcca |
47820252 |
T |
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| Q |
200 |
ccgccgagttccgattattaaaaatcttatcattccttgctttcca |
245 |
Q |
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| T |
47820251 |
ccaccaaattccgattattgaagatcttgtcattcctagctttcca |
47820206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 129
Target Start/End: Original strand, 47318630 - 47318661
Alignment:
| Q |
98 |
tcggattccaacaccattcataatacatacaa |
129 |
Q |
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| T |
47318630 |
tcggattccaacaccattcataatacatacaa |
47318661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 38553154 - 38553122
Alignment:
| Q |
220 |
aaaatcttatcattccttgctttccacaacacc |
252 |
Q |
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| T |
38553154 |
aaaatcttatcattcctagctttccacaacacc |
38553122 |
T |
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