View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9896_low_15 (Length: 256)

Name: NF9896_low_15
Description: NF9896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9896_low_15
NF9896_low_15
[»] chr4 (2 HSPs)
chr4 (16-236)||(2501126-2501346)
chr4 (12-236)||(43942500-43942725)
[»] chr3 (2 HSPs)
chr3 (12-231)||(5885212-5885432)
chr3 (12-236)||(54946229-54946446)
[»] chr6 (1 HSPs)
chr6 (12-231)||(16856265-16856485)
[»] chr7 (1 HSPs)
chr7 (12-236)||(47933427-47933644)
[»] scaffold0182 (1 HSPs)
scaffold0182 (12-236)||(10998-11234)
[»] chr2 (2 HSPs)
chr2 (12-154)||(26230861-26231004)
chr2 (168-236)||(26231049-26231117)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 2501126 - 2501346
Alignment:
Q  16 ggtgttattgtcctctgtagtagacatgatggaaaaatgaagagagaatgaggtaaatgataaaattgattatgaaatgttacagaatgagcagtaaagg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  2501126 ggtgttattgtcctctgtagtagacatgatggaaaaatgaagagagaatgaggtaaatgataaaattgatcatgaaatgttacagaatgagcagaaaagg 2501225  T
Q  116 aatgagattagtgtgattattatataggtgaaagggaaaaaggaaaattaagatgatctaaaatgtaacatctttttaatctttatgtaaaagaatgtaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  2501226 aatgagattagtgtgattattatataggtgaaagggaaaaaggaaaattaagatgatctaaaatgtaacatctttttaagctttatgtgaaagaatgtaa 2501325  T
Q  216 acagacatattcaatgatgat 236  Q
    ||||||| |||||||||||||    
T  2501326 acagacacattcaatgatgat 2501346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 43942725 - 43942500
Alignment:
Q  12 gtttggtgttattgtcctctgtagtagacatgatggaaaaatgaagagagaatgaggtaaatgataaaattgattatgaaatgttacagaatgagcagta 111  Q
    |||||||||||||| | ||  ||||||||||| ||||||| | |||| | |||||||||||||||||||||||| || |||| ||||||||||||||| |    
T  43942725 gtttggtgttattgacatcaatagtagacatggtggaaaagtcaagaaaaaatgaggtaaatgataaaattgatcatcaaatattacagaatgagcagaa 43942626  T
Q  112 aaggaatgagattagtg-tgattattatataggtgaaagggaaaaaggaaaattaagatgatctaaaatgtaacatctttttaatctttatgtaaaagaa 210  Q
    ||||||||||||| | | || |||| || ||||||||||||||||||| ||||   |||||||||||||||||||||||||||| |||||| |  |||||    
T  43942625 aaggaatgagatttgcgttggttatcatgtaggtgaaagggaaaaagggaaatatggatgatctaaaatgtaacatctttttaacctttatatggaagaa 43942526  T
Q  211 tgtaaacagacatattcaatgatgat 236  Q
    |||||||||||| |||||||| ||||    
T  43942525 tgtaaacagacaaattcaatggtgat 43942500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 5885212 - 5885432
Alignment:
Q  12 gtttggtgttattgtcctctgtagtagacatgatggaaaaatgaagagagaatgaggtaaatgataaaattgattatgaaatgttacagaatgagcagta 111  Q
    |||||||||||||| | ||  ||||||||||| ||||||| | |||| | |||||||||||||||||||||||| || |||| ||||||||||||||| |    
T  5885212 gtttggtgttattgacatcaatagtagacatggtggaaaagtcaagaaaaaatgaggtaaatgataaaattgatcatcaaatattacagaatgagcagaa 5885311  T
Q  112 aaggaatgagattagtg-tgattattatataggtgaaagggaaaaaggaaaattaagatgatctaaaatgtaacatctttttaatctttatgtaaaagaa 210  Q
    ||||||||||||| | | || |||| |||||||||||||||||||||| ||||   ||||| |||||||||||||||||||||| ||||||||  |||||    
T  5885312 aaggaatgagatttgcgttggttatcatataggtgaaagggaaaaagggaaatatggatgagctaaaatgtaacatctttttaacctttatgtggaagaa 5885411  T
Q  211 tgtaaacagacatattcaatg 231  Q
    |||||||||||| ||||||||    
T  5885412 tgtaaacagacaaattcaatg 5885432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 54946229 - 54946446
Alignment:
Q  12 gtttggtgttattgtcctctgtagtagacatgatggaaaaatgaagagagaatgaggtaaatgataaaattgattatgaaatgttacagaatgagcagta 111  Q
    |||||||||||||| | ||  ||||||||||| ||||||| | |||| | ||||||| |||||||||||||||| || |||| ||||        ||  |    
T  54946229 gtttggtgttattgacatcaatagtagacatggtggaaaagtcaagaaaaaatgaggcaaatgataaaattgatcatcaaatattac--------cataa 54946320  T
Q  112 aaggaatgagattagtgt-gattattatataggtgaaagggaaaaaggaaaattaagatgatctaaaatgtaacatctttttaatctttatgtaaaagaa 210  Q
    ||||||||||||| | || | |||| |||||||||||||||||||||| ||||   |||||  ||||||||||||||||||||| ||||||||  |||||    
T  54946321 aaggaatgagatttgcgttggttatcatataggtgaaagggaaaaagggaaatatggatgagttaaaatgtaacatctttttaacctttatgtggaagaa 54946420  T
Q  211 tgtaaacagacatattcaatgatgat 236  Q
    |||||||||||| |||||||| ||||    
T  54946421 tgtaaacagacaaattcaatggtgat 54946446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 16856485 - 16856265
Alignment:
Q  12 gtttggtgttattgtcctctgtagtagacatgatggaaaaatgaagagagaatgaggtaaatgataaaattgattatgaaatgttacagaatgagcagta 111  Q
    |||||||||||||| | ||  ||||||||||| ||||||| | |||| | |||||||||||||||||||||||| |  ||||  |||||||||||||| |    
T  16856485 gtttggtgttattgacatcaatagtagacatggtggaaaagtcaagaaaaaatgaggtaaatgataaaattgatcaacaaatactacagaatgagcagaa 16856386  T
Q  112 aaggaatgagattagtgt-gattattatataggtgaaagggaaaaaggaaaattaagatgatctaaaatgtaacatctttttaatctttatgtaaaagaa 210  Q
    ||||||||||||| | || | |||| |||||||||||||||||||||  ||||   ||||| |||||||||||||||||||||| ||||||||  |||||    
T  16856385 aaggaatgagatttgcgttggttatcatataggtgaaagggaaaaagagaaatatggatgagctaaaatgtaacatctttttaacctttatgtggaagaa 16856286  T
Q  211 tgtaaacagacatattcaatg 231  Q
    |||||||||||| ||||||||    
T  16856285 tgtaaacagacaaattcaatg 16856265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 47933427 - 47933644
Alignment:
Q  12 gtttggtgttattgtcctctgtagtagacatgatggaaaaatgaagagagaatgaggtaaatgataaaattgattatgaaatgttacagaatgagcagta 111  Q
    |||||||||||||| | ||  ||||||||||| ||||||| | |||| | ||||||| |||||||||||||||| || |||| ||||        ||  |    
T  47933427 gtttggtgttattgacatcaatagtagacatggtggaaaagtcaagaaaaaatgaggcaaatgataaaattgatcatcaaatattac--------cataa 47933518  T
Q  112 aaggaatgagattagtgt-gattattatataggtgaaagggaaaaaggaaaattaagatgatctaaaatgtaacatctttttaatctttatgtaaaagaa 210  Q
    ||||||||||||| | || | |||| |||||||||||||||||||||| ||||   |||||  ||||||||||||||||||||| ||||||||  |||||    
T  47933519 aaggaatgagatttgcgttggttatcatataggtgaaagggaaaaagggaaatatggatgagttaaaatgtaacatctttttaacctttatgtggaagaa 47933618  T
Q  211 tgtaaacagacatattcaatgatgat 236  Q
    |||||||||||| |||||||| ||||    
T  47933619 tgtaaacagacaaattcaatggtgat 47933644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 10998 - 11234
Alignment:
Q  12 gtttggtgttattgtcctctgtagtagacatgatggaaaaatgaagagagaatgaggtaaatgataaaattgattatgaaatgttacagaatgagcagta 111  Q
    |||||||||||||| | ||  ||||||||||| ||||||| | |||| | |||||||||||||||||||||||| || |||| ||||||||||||||| |    
T  10998 gtttggtgttattgacatcaatagtagacatggtggaaaagt-aagaaaaaatgaggtaaatgataaaattgatcatcaaatattacagaatgagcagaa 11096  T
Q  112 aaggaatgag---------attag-----tgtgattattatataggtgaaagggaaaaaggaaaattaagatgatctaaaatgtaacatctttttaatct 197  Q
    ||||||||||         |  ||     | || |||| |||||||||||||||||||||| ||||   ||||| |||||||||||||||||||||| ||    
T  11097 aaggaatgagcagaaaaggaaaaggaatatttg-ttatcatataggtgaaagggaaaaagggaaatatggatgagctaaaatgtaacatctttttaacct 11195  T
Q  198 ttatgtaaaagaatgtaaacagacatattcaatgatgat 236  Q
    ||||||  ||||||||||||||||| |||||||| ||||    
T  11196 ttatgtggaagaatgtaaacagacaaattcaatggtgat 11234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 26230861 - 26231004
Alignment:
Q  12 gtttggtgttattgtcctctgtagtagacatgatggaaaaatgaagagagaatgaggtaaatgataaaattgattatgaaatgttacagaatgagcagta 111  Q
    |||||||||||||| | ||   |||||||||  ||||||| | ||||||||||||||||||||||||| || || || |||| ||||||||||| ||  |    
T  26230861 gtttggtgttattgacatcaacagtagacatagtggaaaagtcaagagagaatgaggtaaatgataaacttcatcatcaaatattacagaatgatcataa 26230960  T
Q  112 aaggaatgagattagtg-tgattattatataggtgaaagggaaa 154  Q
    ||||||||||||||||| || |||||||||||||||||||||||    
T  26230961 aaggaatgagattagtgttggttattatataggtgaaagggaaa 26231004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 26231049 - 26231117
Alignment:
Q  168 atgatctaaaatgtaacatctttttaatctttatgtaaaagaatgtaaacagacatattcaatgatgat 236  Q
    ||||||||||||||||||||| ||||| ||||||||  ||||||||||||| ||| || ||||||||||    
T  26231049 atgatctaaaatgtaacatctctttaagctttatgtggaagaatgtaaacatacacatccaatgatgat 26231117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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