View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9896_low_16 (Length: 253)
Name: NF9896_low_16
Description: NF9896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9896_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 52766750 - 52766530
Alignment:
| Q |
18 |
gatcaaggtcctccaaatctttacaccagtattgcacctattgaaggttcttctggtggaggtcatcatcaacctcaacaacttgatttcatggctgcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52766750 |
gatcaaggtcctccaaatctttacaccagtattgcacctattgaaggttcttctggtggaggtcatcatcaacctcaacaacttgatttcatggctgcaa |
52766651 |
T |
|
| Q |
118 |
cagcaactacagctacaaccagcggtatccatttcgatccttcactttactcagctccgcttaatgctttcatggcagctggtacacaatttttccaacc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52766650 |
cagcaactacagctacaaccagcggtatccatttcgacccttcactttactcagctccgcttaatgctttcatggcagctggtacacaatttttccaacc |
52766551 |
T |
|
| Q |
218 |
ccaacatcctaattaatatgt |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
52766550 |
ccaacatcctaattaatatgt |
52766530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University