View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9896_low_18 (Length: 235)
Name: NF9896_low_18
Description: NF9896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9896_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 41672481 - 41672247
Alignment:
| Q |
1 |
gtcaattggagtctgcgagctcttactcttgcctgaacccttaccaatgcttgcatgcaacgcatggtcatctgtgcttgcttccgcacattatgtcctc |
100 |
Q |
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| T |
41672481 |
gtcaattggagtctgcgagctcttactcttgcctgaacccttaccaatgcttgcatgcaacgcatggtcatctgtgcttgcttccgcacattatgtcctc |
41672382 |
T |
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| Q |
101 |
tcacaagtgcttgcaatctcactaatcccttcaaagcacgcagtgcacgtcgagcctatatacaaaatggaacagcttatgaaaaaataagtaaaagcta |
200 |
Q |
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| T |
41672381 |
tcacaagtgcctgcaatctcactaatcccttcaaagcacgcagtgcacgtcgagcctatatacaaaatggaacagcttatgaaaaaataagtaaaagcta |
41672282 |
T |
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| Q |
201 |
aagaccggaaaacataggtaaatgcgaataaaata |
235 |
Q |
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| T |
41672281 |
aagaccggaaaacataggtaaatgcgaataaaata |
41672247 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 624548 - 624661
Alignment:
| Q |
46 |
aatgcttgcatgcaacgcatggtcatctgtgcttgcttccgcacattatgtcctctcacaagtgcttgcaatctcactaatcccttcaaagcacgcagtg |
145 |
Q |
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| T |
624548 |
aatgcttgcatacaccgcattgtcatctgagcttgcttgcgcacattgtgcccccgcaccaacgcttgcagcctcactaaccctttcaatgcgcgtaatg |
624647 |
T |
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| Q |
146 |
cacgtcgagcctat |
159 |
Q |
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| T |
624648 |
cacgtcgagcctat |
624661 |
T |
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