View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9896_low_5 (Length: 377)
Name: NF9896_low_5
Description: NF9896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9896_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 361
Target Start/End: Original strand, 10994360 - 10994706
Alignment:
| Q |
15 |
atgtattttacatacttataaatgtcctcctttattttttggtgaaaaaagggtctaaagaccctaacaactggaaaccacaaggaaagacaacagctga |
114 |
Q |
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| T |
10994360 |
atgtattttacatacttataaatgtcctcctttattttttggtgaaaaaagggtctaaagaccctaacaactggaaaccacaaggaaagacaacagctga |
10994459 |
T |
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| Q |
115 |
agattcagcaaaaacaacgttcaaaatgaaataggaacaaagtcaaatacaaaaacattactctagtcaaagtaacatacaaaaataaaagtaaccgaac |
214 |
Q |
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| T |
10994460 |
agattcagcaaaaacaacgttcaaaatgaaataggaacaaagtcaaatacaaaaacattactctagtcaaagtaacatacaaaaataaaagtaaccgaac |
10994559 |
T |
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| Q |
215 |
attttaccatttacactattatttacaacatcacctttagctttgaaatcaaggtctgttgaggaacactcatccgaaagaaatcttcttgccacctgtc |
314 |
Q |
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| T |
10994560 |
atgttaccatttacactattatttacaacatcacctttagctttgaaatcaaggtctgttgaggaacactcatccgaaagaaatcttcttgccacctgtc |
10994659 |
T |
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| Q |
315 |
tgaatcagactcaatatatggaaagttttaaagcctcttctccatgc |
361 |
Q |
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| T |
10994660 |
tgaatcagactcaatatatggaaagttttaaagcctcttctccatgc |
10994706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 11006908 - 11006834
Alignment:
| Q |
88 |
gaaaccacaaggaaagacaacagctgaagattcagcaaaaacaacgttcaaaatgaaa-taggaacaaagtcaaa |
161 |
Q |
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| T |
11006908 |
gaaactacaaggaaagacaacaaccaaataatcagcgaaaacaacgttcaaaatgaaagtaggaacaaaatcaaa |
11006834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 11006690 - 11006630
Alignment:
| Q |
267 |
ggtctgttgaggaacactcatccgaaagaaatcttcttgccacctgtctgaatcagactcaat |
329 |
Q |
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| T |
11006690 |
ggtctgtagaggaacactcatccgaaagatatcttattcccaccag--tgaatcagactcaat |
11006630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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