View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9896_low_6 (Length: 355)
Name: NF9896_low_6
Description: NF9896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9896_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 40414896 - 40415221
Alignment:
| Q |
19 |
aatgttcaataatgacattatccgaaagatcattgccaagcatttcccatacactactatgaaggtaatttctgaaaatcctataatgttcataaagtcc |
118 |
Q |
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| T |
40414896 |
aatgttcaataatgacattatccgaaagatcattgccgagcatttcccatacactactatgaaggtaatttctgaaaatcctataatgttcataaagttc |
40414995 |
T |
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| Q |
119 |
accttcaaccgtaactacgctttttctattattgatacaattccagctccgactaggcgagcaccgcgctctgttactatgtcgcagacctcgacaacca |
218 |
Q |
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| T |
40414996 |
aatttcaaccgtaaccatgctttttctattattgatacaattccagc-ccgactaggcgagcaccgcgctctgttactatgttgcagacctcgacaacca |
40415094 |
T |
|
| Q |
219 |
cttcgcgtgccattggagttgtgctagtgatctgagttggttttcttaaatttcat----agtgtactcattttaatatatatgtaaaggtgaaaataga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
40415095 |
cttcgcgtgccattggagttgtgctagtgatctgagttggttttcttaaatttcatagtaagtgtactcatttta--atatatgtaaaggtgaaaataga |
40415192 |
T |
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| Q |
315 |
cttaccacaaagacctcgtttagtttctc |
343 |
Q |
| |
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|||||| |||||||||||||||||||||| |
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| T |
40415193 |
cttaccgcaaagacctcgtttagtttctc |
40415221 |
T |
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