View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9896_low_7 (Length: 353)
Name: NF9896_low_7
Description: NF9896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9896_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 28629111 - 28629447
Alignment:
| Q |
1 |
agagaaagagtaatgagaaaaaggcaatggaaatgaggtcgatgagacgccattgacgtgtgttggtgcgtttccatggtgggaaatttgagtgacgcat |
100 |
Q |
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| T |
28629111 |
agagaaagagtaatgagaaaaaggcaatggaaatgaggtcgatgagacgccattgacgtgtgttggtgcgtttccatggtgggaaatttgagtgacgcat |
28629210 |
T |
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| Q |
101 |
tttgaggaagaaggtggatctgattaataagctatttgggtcattgaaattgatttcaaaatcggttattgattaagggattcaaaagggttgttcgtga |
200 |
Q |
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| T |
28629211 |
tttgaggaagaaggtggatctgattaataagctatttgggtcattgaaattgatttcaaaatcggtttttgattaagggattcaaaagggttgttcgtga |
28629310 |
T |
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| Q |
201 |
gattctgtggtggaaatag-aatgtaagagtttgttttggagttaagaaaaaatgtgtatctggattgatttcagtgtcagta--tgtgtgtgtgagaga |
297 |
Q |
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| T |
28629311 |
gattctgtggtggaaatagaaatgtaagagtttgttttggagttaagaaaaaatgtgtagctggattgatttcagtgtcagtatgtgtgtgtgtgagaga |
28629410 |
T |
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| Q |
298 |
gtgactctttgatgtgattcttttgttatcaagtgtt |
334 |
Q |
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| T |
28629411 |
gtgactctttgttgtgattcttttgttatgaagtgtt |
28629447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 12384944 - 12385167
Alignment:
| Q |
1 |
agagaaagagtaatgagaaaaaggcaatggaaatgaggtcgatgagacgccattgacgtgtgttggtgcgtttccatggtgggaaatttgagtgacgcat |
100 |
Q |
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| T |
12384944 |
agagagagagtaatgagaagaaagctatggaaatgaggttgataagacgccattgacgtgtgttggtgtgtttccatggtgggaaatttgagtgacccat |
12385043 |
T |
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| Q |
101 |
tttgaggaagaaggtggatctgattaataagctatttgggtcattgaaattgatttcaaaatcggttattgattaagggattcaaaagggttgttcgtga |
200 |
Q |
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| T |
12385044 |
tttgaggaagaaggtggatctgattaataagccatttgggtattcgattttggtttcaaaatcggtttttgattta-ggattaaaaagggttgtttgtgt |
12385142 |
T |
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| Q |
201 |
gattctgtggtggaaatagaatgta |
225 |
Q |
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|||| |||| |||||||| |||||| |
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| T |
12385143 |
gattatgtgatggaaatataatgta |
12385167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 14455669 - 14455892
Alignment:
| Q |
1 |
agagaaagagtaatgagaaaaaggcaatggaaatgaggtcgatgagacgccattgacgtgtgttggtgcgtttccatggtgggaaatttgagtgacgcat |
100 |
Q |
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| T |
14455669 |
agagagagagtaatgagaagaaagctatggaaatgaggttgataagacgccattgacgtgtgttggtgtgtttccattgtgggaaatttgagtgacccat |
14455768 |
T |
|
| Q |
101 |
tttgaggaagaaggtggatctgattaataagctatttgggtcattgaaattgatttcaaaatcggttattgattaagggattcaaaagggttgttcgtga |
200 |
Q |
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| T |
14455769 |
tttgaggaagaaggtgggtctgattaataagccatttgggtattcgattttggtttcaaaatcggtttttgattta-ggattaaaaagggttgtttgtgt |
14455867 |
T |
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| Q |
201 |
gattctgtggtggaaatagaatgta |
225 |
Q |
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| T |
14455868 |
gattctgtgatggaaatataatgta |
14455892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 18703820 - 18703597
Alignment:
| Q |
1 |
agagaaagagtaatgagaaaaaggcaatggaaatgaggtcgatgagacgccattgacgtgtgttggtgcgtttccatggtgggaaatttgagtgacgcat |
100 |
Q |
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||||| ||||||||| ||| || || ||||||||||| | ||| |||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
18703820 |
agagagagagtaatgtgaagaaagctatggaaatgagtttgataagacgccattgatgtgtgttggtgtctttccatggtgggaaatttgagtgacccat |
18703721 |
T |
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| Q |
101 |
tttgaggaagaaggtggatctgattaataagctatttgggtcattgaaattgatttcaaaatcggttattgattaagggattcaaaagggttgttcgtga |
200 |
Q |
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| T |
18703720 |
tttgaggaagaaggtggttctgattaataagccatttgggtattcgattttggtttcaaaatcggtttttgattta-ggattaaaaagggttgtttgtgt |
18703622 |
T |
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| Q |
201 |
gattctgtggtggaaatagaatgta |
225 |
Q |
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||||||||| |||||||| |||||| |
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| T |
18703621 |
gattctgtgatggaaatataatgta |
18703597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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