View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9896_low_9 (Length: 340)
Name: NF9896_low_9
Description: NF9896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9896_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 46632676 - 46632367
Alignment:
| Q |
20 |
cataggacatttgttctgcataagatggcctagggaaagcaaaagggtgatttgattcatctgtttttgatatagcagaatagcattgaggactgctttg |
119 |
Q |
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| T |
46632676 |
cataggacatttgttctgcataagatggcctagggaaagcaaaagggtgatttgattcatctgtttttgatatagcagaatagcattgaggactgctttg |
46632577 |
T |
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| Q |
120 |
agctgtactgaagcaatcctcaaaatggccactgcatgcttttggactcaattctgttaaagctgatggagctggtgatactttgtagttttcttctttc |
219 |
Q |
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| T |
46632576 |
agctgtactgaagcaatcctcaaaatggccactgcatgcttttggactcaattctgttaaagctgatggagctggtgatactttgtagttttcttctttc |
46632477 |
T |
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| Q |
220 |
gtgtaggaaccatttatggaatatctattttcagattgctcataatgttgtctatttacactgctgcttctgcttgtagagttgccttttgattcacaaa |
319 |
Q |
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| T |
46632476 |
gtataggaaccatttatggaatatctattttcagattgctcataatgttgtctatttacactgctgcttctgcttgtagagttgccttttgattcacaaa |
46632377 |
T |
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| Q |
320 |
aatccatctc |
329 |
Q |
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| T |
46632376 |
aatccatctc |
46632367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 201 - 329
Target Start/End: Complemental strand, 11979843 - 11979711
Alignment:
| Q |
201 |
tttgtagttttcttctttcgtgtaggaaccatttatggaatatctattttcagattgctcataatgt---tgtct-atttacactgctgcttctgcttgt |
296 |
Q |
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| T |
11979843 |
tttgtatttttcttcttttgagtaggaaccatttgtggaatatctatgttcaaattgttcataatgtccatttgtaatatacactgttgcttctgcttgc |
11979744 |
T |
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| Q |
297 |
agagttgccttttgattcacaaaaatccatctc |
329 |
Q |
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| T |
11979743 |
agaattaccatttgattcacaaaaatccatctc |
11979711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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