View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9897_low_10 (Length: 229)
Name: NF9897_low_10
Description: NF9897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9897_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 8075268 - 8075460
Alignment:
| Q |
20 |
cccacttgatcgacacgggtctcaagaaactcaataactgattgtacaagtgagcttgaacttcaaagagttcacttgctttttgctcattctcagaacc |
119 |
Q |
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| T |
8075268 |
cccacttgatcgacacgggtctcaagaaactaaataactgattgtacaagtgagcttgaacttcaaagagttcacttgctttgtgctcattctcagaacc |
8075367 |
T |
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| Q |
120 |
catgaatgattattgaatcaattgagttcttgtgattatgtgaatgtgttgatatacattaacttagtttgcaatgctttatataggcaccta |
212 |
Q |
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| T |
8075368 |
catgaatgattattgaatcaattgagttcttgtgattatgtgaatgtgttgatatacattaacttagtttgcaatgctttatataggcaccta |
8075460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 8066833 - 8067029
Alignment:
| Q |
20 |
cccacttgatcgacacgggtctcaagaaactcaataactgattgtacaagtgagcttgaacttcaaagagttcacttgctttttgctcattctcagaacc |
119 |
Q |
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|||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||| || ||||||| ||||||||||| | ||||||||||||| | |
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| T |
8066833 |
cccacttgatcgacacgggtctcatgaaactgaatatctgattgtacaggtgagcttgagctacaaagagctcacttgctttgtactcattctcagaatc |
8066932 |
T |
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| Q |
120 |
catgaatg------attattgaatcaattgagttcttgtgattatgtgaatgtgttgatatacattaacttagtttgcaatgctttatataggcacc |
210 |
Q |
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| T |
8066933 |
catgaatgattaatattattgaatcaaatgaattcttgtgattatgtgaatttgtttatatacattaatttagttttctatgctttatataagcacc |
8067029 |
T |
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