View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9897_low_11 (Length: 211)
Name: NF9897_low_11
Description: NF9897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9897_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 13007493 - 13007319
Alignment:
| Q |
18 |
gctctatcctcttgcttctacaatagatgctaccccaccaaaatttaagatgaaaatacaaaaaatgaatgtatattgtatagatattttgagtgaagag |
117 |
Q |
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| T |
13007493 |
gctctatcctcttgcttctacaatagatgctaccccaccaaaatttaagatgaaaatacaaaaaatgaatgtatattgtatagatattttgagtgaagag |
13007394 |
T |
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| Q |
118 |
cttaatgaaatacttattcaataagtgcttattttgtcaatgtttatgtcgtaagtacttaaattaaaacgttat |
192 |
Q |
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| T |
13007393 |
cttaatgaaatacttattcaataagtgcttattttgtcaatgtttatgtcgtaagtacttaaattaaaaggttat |
13007319 |
T |
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Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 13119977 - 13120126
Alignment:
| Q |
22 |
tatcctcttgcttctacaatagatgctaccccaccaaaattta----agatgaaaatacaaaaaatgaatgtatattgtatagatattttgagtgaagag |
117 |
Q |
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| T |
13119977 |
tatcctcttgcctctacaatagatgctaccctaccaaaatttagtgtagaagaaaatacaaaaaaaaaa---aaaaagtgtagata-tttgagtgaagag |
13120072 |
T |
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| Q |
118 |
cttaatgaaatacttattcaataagtgcttattttgtcaatgtttatgtcgtaa |
171 |
Q |
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| T |
13120073 |
cttaatcaaatacttattcaataacaacttattattgcagtgtttatgtcgtaa |
13120126 |
T |
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