View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9897_low_2 (Length: 421)

Name: NF9897_low_2
Description: NF9897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9897_low_2
NF9897_low_2
[»] chr8 (4 HSPs)
chr8 (16-404)||(25487827-25488215)
chr8 (350-404)||(25692606-25692660)
chr8 (354-404)||(25798558-25798608)
chr8 (352-404)||(25384259-25384311)
[»] scaffold0955 (1 HSPs)
scaffold0955 (350-404)||(3726-3780)
[»] scaffold0070 (2 HSPs)
scaffold0070 (350-404)||(38660-38714)
scaffold0070 (350-404)||(19263-19317)
[»] chr1 (3 HSPs)
chr1 (232-327)||(16103016-16103110)
chr1 (235-309)||(14656316-14656390)
chr1 (215-285)||(27004931-27005001)
[»] chr3 (1 HSPs)
chr3 (362-404)||(20591921-20591963)


Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Original strand, 25487827 - 25488215
Alignment:
Q  16 gagcagagaaatgttttccgtcaacaagaagctattccggtttgagtgaggatctattaaaattcattaacagtctagacatgttacgaagggcattagg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25487827 gagcagagaaatgttttccgtcaacaagaagctattccggtttgagtgaggatctattaaaattcattaacagtctagacatgttacgaagggcattagg 25487926  T
Q  116 atgctcaatataaggatgggtgggttgatataatttaagttggaaggtgtgttatattggataatcgcttttatcctttttcaaggagatggtgattctg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25487927 atgctcaatataaggatgggtgggttgatataatttaagttggaaggtgtgttatattggataatcggttttatcctttttcaaggagatggtgattctg 25488026  T
Q  216 taccatataatttgatctcaagtttaggatctaacaagttattgaaaaggagttgtcatggataattggttttgcttatagatatacaaagtgagttctg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25488027 taccatataatttgatctcaagtttaggatctaacaagttattgaaaaggagttgtcatggataattggttttgcttatagatatacaaagtgagttctg 25488126  T
Q  316 aagaattataaaaagttccaaaagtgtgtaggttttcaatattatcaaagcatagatacttacgaaaatcaagtaagtcatgaggcaac 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25488127 aagaattataaaaagttccaaaagtgtgtaggttttcaatattatcaaagcatagatacttacgaaaatcaagtaagtcatgaggcaac 25488215  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 350 - 404
Target Start/End: Original strand, 25692606 - 25692660
Alignment:
Q  350 ttcaatattatcaaagcatagatacttacgaaaatcaagtaagtcatgaggcaac 404  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  25692606 ttcaatattataaaagcatagatacttacgaaaatcaaataagtcatgaggcaac 25692660  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 25798558 - 25798608
Alignment:
Q  354 atattatcaaagcatagatacttacgaaaatcaagtaagtcatgaggcaac 404  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  25798558 atattataagagcatagatacttacgaaaatcaagtaagtcatgaggcaac 25798608  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 25384259 - 25384311
Alignment:
Q  352 caatattatcaaagcatagatacttacgaaaatcaagtaagtcatgaggcaac 404  Q
    ||||| ||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  25384259 caatactataaaagcatagatacttatgaaaatcaactaagtcatgaggcaac 25384311  T

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Target: scaffold0955 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0955
Description:

Target: scaffold0955; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 350 - 404
Target Start/End: Original strand, 3726 - 3780
Alignment:
Q  350 ttcaatattatcaaagcatagatacttacgaaaatcaagtaagtcatgaggcaac 404  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3726 ttcaatattataaaagcatagatacttacgaaaatcaagtaagtcatgaggcaac 3780  T

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Target: scaffold0070 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 350 - 404
Target Start/End: Complemental strand, 38714 - 38660
Alignment:
Q  350 ttcaatattatcaaagcatagatacttacgaaaatcaagtaagtcatgaggcaac 404  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38714 ttcaatattataaaagcatagatacttacgaaaatcaagtaagtcatgaggcaac 38660  T

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Target: scaffold0070; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 404
Target Start/End: Complemental strand, 19317 - 19263
Alignment:
Q  350 ttcaatattatcaaagcatagatacttacgaaaatcaagtaagtcatgaggcaac 404  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||    
T  19317 ttcaatattataaaagcatagatacttacgaaaattaagtaagtcatgagtcaac 19263  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 327
Target Start/End: Original strand, 16103016 - 16103110
Alignment:
Q  232 ctcaagtttaggatctaacaagttattgaaaaggagttgtcatggataattggttttgcttatagatatacaaagtgagttctgaagaattataaa 327  Q
    ||||| |||||||||||||||||||||||||||  ||||||| ||||||||||| ||| |||  ||||||  ||||||||   |||||||||||||    
T  16103016 ctcaaatttaggatctaacaagttattgaaaagacgttgtcaaggataattggtcttgattaaggatata-gaagtgagtaaggaagaattataaa 16103110  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 14656316 - 14656390
Alignment:
Q  235 aagtttaggatctaacaagttattgaaaaggagttgtcatggataattggttttgcttatagatatacaaagtga 309  Q
    |||||||||||||||||||| |||| ||||  ||||||| | ||||||||||||| |||| |||||  |||||||    
T  14656316 aagtttaggatctaacaagtcattgcaaagaggttgtcaagaataattggttttgattatggatattaaaagtga 14656390  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 27004931 - 27005001
Alignment:
Q  215 gtaccatataatttgatctcaagtttaggatctaacaagttattgaaaaggagttgtcatggataattggt 285  Q
    ||||||||| || | | |||||||||||||||||||||||||||||| ||   |||||| |||||||||||    
T  27004931 gtaccatattatctaacctcaagtttaggatctaacaagttattgaagagacattgtcaaggataattggt 27005001  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 404
Target Start/End: Original strand, 20591921 - 20591963
Alignment:
Q  362 aaagcatagatacttacgaaaatcaagtaagtcatgaggcaac 404  Q
    |||||||||||||||| |||||||||||||||||||| |||||    
T  20591921 aaagcatagatacttatgaaaatcaagtaagtcatgacgcaac 20591963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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