View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9897_low_4 (Length: 307)
Name: NF9897_low_4
Description: NF9897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9897_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 15 - 293
Target Start/End: Complemental strand, 44779929 - 44779650
Alignment:
| Q |
15 |
gaccgagctaactgtatctttgtttgttnnnnnnncaattcaactacatgcagcattgcgaaggcaagtgcccccactgtgtgtttcaacatgtccctct |
114 |
Q |
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| T |
44779929 |
gaccgagctaagtgtatctttgtttgttaaaaaaacaattcaactacatgcagcattgcgaaggcaagtgcccccactgtgtgtttcaacatgtccctct |
44779830 |
T |
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| Q |
115 |
ttatactgcatagggttaattaagaaaatagtaactataaacacatagatttttgttttcgaaccctg-cnnnnnnnntcgtannnnnnnagttcttata |
213 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
44779829 |
ttatactgtacagggttaattaagaaaatagtaactataaatacatagatttttgttttcgaaccctgaaaaaaaaaatcgtatttttttagttcttata |
44779730 |
T |
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| Q |
214 |
atattttcctttaatatctttcagatatgtttagattaatggaatagaataaatttatgtttcgctgtttggataaagtg |
293 |
Q |
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| T |
44779729 |
acattttcctttaatatctttcagatatgtttaaattaatggaatagaataaatttatgtttcgctgtttggataaagtg |
44779650 |
T |
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