View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9897_low_5 (Length: 265)
Name: NF9897_low_5
Description: NF9897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9897_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 4472733 - 4472867
Alignment:
| Q |
14 |
agatacacttatatatagggttcacacccacatattgatgttgtacagttttgatctcttaatttttaacagttaatctttaattcagaagttgaattaa |
113 |
Q |
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| T |
4472733 |
agatacacatatatatagggttcacacccacgtattgatgttgtacagttttgatctcttaatttttaaccgttaatctttaattcagaagttgaattga |
4472832 |
T |
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| Q |
114 |
acatttatttaagtaaaattgagaaatcaaaatag |
148 |
Q |
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| T |
4472833 |
acattcgtttaagtaaaattgagaaatcaaaatag |
4472867 |
T |
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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 4472923 - 4472999
Alignment:
| Q |
172 |
aaatcccaaatcgtttaataaaaataatatttcacaagttttatgtgaaaaaatataaattttcattgatctaaaaca |
249 |
Q |
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| T |
4472923 |
aaatcccaaatcgtttaataaaaataatatttcacaagttttatgtgaaaaaatataaa-tttcattgatctaaaaca |
4472999 |
T |
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