View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9897_low_6 (Length: 254)
Name: NF9897_low_6
Description: NF9897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9897_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 39798953 - 39798722
Alignment:
| Q |
1 |
ttaaactatcattttcatttcctcttcaatttagtctccgtaccatataaatatactaaatagtccctaaaatatataatgttcttcaatttatccctaa |
100 |
Q |
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| T |
39798953 |
ttaaactatcattttcatttcctcttcaatttagtctccgtgtaatataaatatactaaatagtccctaaaatatataatgttcttcaatttatccttaa |
39798854 |
T |
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| Q |
101 |
aaaatcttcaatttaaatttagtctctactgttgagatacaataaagattaaattgacgaattttctcatatacttcagaactaaaactttagaactaaa |
200 |
Q |
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| T |
39798853 |
aaaatcttcaattta------gtctctactgttgagatacaataaagattaaattgacgaattttctcatatacttcagaactaaaactttagaactaaa |
39798760 |
T |
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| Q |
201 |
ctgataaatttcatatatgctatggactacttattaag |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
39798759 |
ctgataaatttcatatatgctatggactacttattaag |
39798722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 79
Target Start/End: Complemental strand, 16193577 - 16193546
Alignment:
| Q |
48 |
taaatatactaaatagtccctaaaatatataa |
79 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
16193577 |
taaatatactaaatagtccctaaaatatataa |
16193546 |
T |
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