View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9897_low_7 (Length: 252)

Name: NF9897_low_7
Description: NF9897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9897_low_7
NF9897_low_7
[»] chr4 (4 HSPs)
chr4 (18-250)||(7342152-7342384)
chr4 (178-209)||(23819123-23819154)
chr4 (218-249)||(54325113-54325144)
chr4 (217-249)||(24929456-24929488)
[»] chr7 (8 HSPs)
chr7 (217-249)||(30160965-30160997)
chr7 (218-249)||(5006585-5006616)
chr7 (222-252)||(31338468-31338498)
chr7 (216-250)||(33601167-33601201)
chr7 (216-249)||(7244665-7244698)
chr7 (218-247)||(29363483-29363512)
chr7 (217-249)||(44239055-44239087)
chr7 (216-248)||(47616704-47616736)
[»] chr3 (7 HSPs)
chr3 (91-147)||(21872213-21872269)
chr3 (217-249)||(40122827-40122859)
chr3 (178-217)||(36646387-36646426)
chr3 (218-249)||(38462244-38462275)
chr3 (218-249)||(49586992-49587023)
chr3 (222-252)||(1816543-1816573)
chr3 (217-249)||(53457340-53457372)
[»] chr2 (7 HSPs)
chr2 (91-147)||(22878194-22878250)
chr2 (218-248)||(5043636-5043666)
chr2 (219-249)||(33942113-33942143)
chr2 (220-249)||(29429835-29429864)
chr2 (216-249)||(32098382-32098415)
chr2 (218-247)||(33192158-33192187)
chr2 (218-246)||(33256706-33256734)
[»] chr8 (5 HSPs)
chr8 (221-252)||(6918258-6918289)
chr8 (216-250)||(43907873-43907907)
chr8 (218-251)||(1112218-1112251)
chr8 (216-249)||(20672735-20672768)
chr8 (216-252)||(14929190-14929226)
[»] chr6 (5 HSPs)
chr6 (218-249)||(10154184-10154215)
chr6 (218-252)||(3204618-3204652)
chr6 (216-249)||(31672542-31672575)
chr6 (216-252)||(31964669-31964706)
chr6 (218-250)||(323773-323805)
[»] chr5 (9 HSPs)
chr5 (218-249)||(14295469-14295500)
chr5 (218-249)||(28586842-28586873)
chr5 (221-251)||(38831535-38831565)
chr5 (218-248)||(41277426-41277456)
chr5 (218-247)||(583849-583878)
chr5 (220-249)||(985596-985625)
chr5 (92-137)||(17369309-17369354)
chr5 (218-247)||(32059665-32059694)
chr5 (221-249)||(29117009-29117037)
[»] chr1 (4 HSPs)
chr1 (218-249)||(15360857-15360888)
chr1 (219-249)||(12477364-12477394)
chr1 (216-249)||(14737779-14737812)
chr1 (216-249)||(23373364-23373397)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 7342384 - 7342152
Alignment:
Q  18 gcagctacataccatatgctactgcaatgcctaacacaatatcaaagttttgttatctccacgactgacggtcatgtttggattgacttatatgatctta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7342384 gcagctacataccatatgctactgcaatgcctaacacaatatcaaagttttgttatctccaggactgacggtcatgtttggattgacttatatgatctta 7342285  T
Q  118 tcaactgaaataatcacttgcgagactgttgtagttgacagatgaaaacaagttataatgtgtccataagttgttttcatcttatttctatagactctct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7342284 tcaactgaaataatcacttgcgagactgttgtagttgacagatgaaaacaagttataatgtgtccgtaagttgttttcatcttatttctatagactctct 7342185  T
Q  218 tatgaaaacagtttgactttattttatctttta 250  Q
    |||||||||||||||||||||||||||||||||    
T  7342184 tatgaaaacagtttgactttattttatctttta 7342152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 209
Target Start/End: Complemental strand, 23819154 - 23819123
Alignment:
Q  178 tgtccataagttgttttcatcttatttctata 209  Q
    ||||||||||||||||||||||||||||||||    
T  23819154 tgtccataagttgttttcatcttatttctata 23819123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 249
Target Start/End: Original strand, 54325113 - 54325144
Alignment:
Q  218 tatgaaaacagtttgactttattttatctttt 249  Q
    ||||||||||||||||||||||||||||||||    
T  54325113 tatgaaaacagtttgactttattttatctttt 54325144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 24929488 - 24929456
Alignment:
Q  217 ttatgaaaacagtttgactttattttatctttt 249  Q
    |||||||||||||| ||||||||||||||||||    
T  24929488 ttatgaaaacagttagactttattttatctttt 24929456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 30160965 - 30160997
Alignment:
Q  217 ttatgaaaacagtttgactttattttatctttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  30160965 ttatgaaaacagtttgactttattttatctttt 30160997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 249
Target Start/End: Original strand, 5006585 - 5006616
Alignment:
Q  218 tatgaaaacagtttgactttattttatctttt 249  Q
    ||||||||||||||||||||||||||||||||    
T  5006585 tatgaaaacagtttgactttattttatctttt 5006616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 252
Target Start/End: Complemental strand, 31338498 - 31338468
Alignment:
Q  222 aaaacagtttgactttattttatcttttatt 252  Q
    |||||||||||||||||||||||||||||||    
T  31338498 aaaacagtttgactttattttatcttttatt 31338468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 33601167 - 33601201
Alignment:
Q  216 cttatgaaaacagtttgactttattttatctttta 250  Q
    ||||||||||||||||||||||||||||| |||||    
T  33601167 cttatgaaaacagtttgactttattttatttttta 33601201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 7244698 - 7244665
Alignment:
Q  216 cttatgaaaacagtttgactttattttatctttt 249  Q
    |||||||||||||||||||||| |||||||||||    
T  7244698 cttatgaaaacagtttgactttcttttatctttt 7244665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 29363512 - 29363483
Alignment:
Q  218 tatgaaaacagtttgactttattttatctt 247  Q
    ||||||||||||||||||||||||||||||    
T  29363512 tatgaaaacagtttgactttattttatctt 29363483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 44239055 - 44239087
Alignment:
Q  217 ttatgaaaacagtttgactttattttatctttt 249  Q
    ||||||||||| |||||||||||||||||||||    
T  44239055 ttatgaaaacattttgactttattttatctttt 44239087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 47616704 - 47616736
Alignment:
Q  216 cttatgaaaacagtttgactttattttatcttt 248  Q
    ||||||||||||||||||||||||| |||||||    
T  47616704 cttatgaaaacagtttgactttattctatcttt 47616736  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 21872213 - 21872269
Alignment:
Q  91 atgtttggattgacttatatgatcttatcaactgaaataatcacttgcgagactgtt 147  Q
    ||||||||||| |||||| |||||||||| ||||| |||| |||||| |||||||||    
T  21872213 atgtttggattaacttatttgatcttatctactgacataagcacttgtgagactgtt 21872269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 40122827 - 40122859
Alignment:
Q  217 ttatgaaaacagtttgactttattttatctttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  40122827 ttatgaaaacagtttgactttattttatctttt 40122859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 36646387 - 36646426
Alignment:
Q  178 tgtccataagttgttttcatcttatttctatagactctct 217  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  36646387 tgtccataagctgttttcatcttatttctataaactctct 36646426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 249
Target Start/End: Complemental strand, 38462275 - 38462244
Alignment:
Q  218 tatgaaaacagtttgactttattttatctttt 249  Q
    ||||||||||||||||||||||||||||||||    
T  38462275 tatgaaaacagtttgactttattttatctttt 38462244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 249
Target Start/End: Original strand, 49586992 - 49587023
Alignment:
Q  218 tatgaaaacagtttgactttattttatctttt 249  Q
    ||||||||||||||||||||||||||||||||    
T  49586992 tatgaaaacagtttgactttattttatctttt 49587023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 252
Target Start/End: Complemental strand, 1816573 - 1816543
Alignment:
Q  222 aaaacagtttgactttattttatcttttatt 252  Q
    |||||||||||||||||||||||||||||||    
T  1816573 aaaacagtttgactttattttatcttttatt 1816543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 53457372 - 53457340
Alignment:
Q  217 ttatgaaaacagtttgactttattttatctttt 249  Q
    ||||||||| |||||||||||||||||||||||    
T  53457372 ttatgaaaatagtttgactttattttatctttt 53457340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 22878250 - 22878194
Alignment:
Q  91 atgtttggattgacttatatgatcttatcaactgaaataatcacttgcgagactgtt 147  Q
    |||||||||||||||||| ||| |||||| ||||| |||| |||||| |||||||||    
T  22878250 atgtttggattgacttatttgagcttatccactgacataagcacttgtgagactgtt 22878194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 5043636 - 5043666
Alignment:
Q  218 tatgaaaacagtttgactttattttatcttt 248  Q
    |||||||||||||||||||||||||||||||    
T  5043636 tatgaaaacagtttgactttattttatcttt 5043666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 249
Target Start/End: Complemental strand, 33942143 - 33942113
Alignment:
Q  219 atgaaaacagtttgactttattttatctttt 249  Q
    |||||||||||||||||||||||||||||||    
T  33942143 atgaaaacagtttgactttattttatctttt 33942113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 249
Target Start/End: Original strand, 29429835 - 29429864
Alignment:
Q  220 tgaaaacagtttgactttattttatctttt 249  Q
    ||||||||||||||||||||||||||||||    
T  29429835 tgaaaacagtttgactttattttatctttt 29429864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 32098382 - 32098415
Alignment:
Q  216 cttatgaaaacagtttgactttattttatctttt 249  Q
    |||||||||||| |||||||||||||||||||||    
T  32098382 cttatgaaaacactttgactttattttatctttt 32098415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 33192187 - 33192158
Alignment:
Q  218 tatgaaaacagtttgactttattttatctt 247  Q
    ||||||||||||||||||||||||||||||    
T  33192187 tatgaaaacagtttgactttattttatctt 33192158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 33256734 - 33256706
Alignment:
Q  218 tatgaaaacagtttgactttattttatct 246  Q
    |||||||||||||||||||||||||||||    
T  33256734 tatgaaaacagtttgactttattttatct 33256706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 221 - 252
Target Start/End: Original strand, 6918258 - 6918289
Alignment:
Q  221 gaaaacagtttgactttattttatcttttatt 252  Q
    ||||||||||||||||||||||||||||||||    
T  6918258 gaaaacagtttgactttattttatcttttatt 6918289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 43907873 - 43907907
Alignment:
Q  216 cttatgaaaacagtttgactttattttatctttta 250  Q
    |||||||||||| ||||||||||||||||||||||    
T  43907873 cttatgaaaacaatttgactttattttatctttta 43907907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 1112251 - 1112218
Alignment:
Q  218 tatgaaaacagtttgactttattttatcttttat 251  Q
    |||||||||||||||||||||||| |||||||||    
T  1112251 tatgaaaacagtttgactttatttgatcttttat 1112218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 20672768 - 20672735
Alignment:
Q  216 cttatgaaaacagtttgactttattttatctttt 249  Q
    ||||| ||||||||||||||||||||||||||||    
T  20672768 cttataaaaacagtttgactttattttatctttt 20672735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 14929190 - 14929226
Alignment:
Q  216 cttatgaaaacagtttgactttattttatcttttatt 252  Q
    |||||||||||||||||||| |||||| |||||||||    
T  14929190 cttatgaaaacagtttgactctattttgtcttttatt 14929226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 249
Target Start/End: Complemental strand, 10154215 - 10154184
Alignment:
Q  218 tatgaaaacagtttgactttattttatctttt 249  Q
    ||||||||||||||||||||||||||||||||    
T  10154215 tatgaaaacagtttgactttattttatctttt 10154184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 252
Target Start/End: Original strand, 3204618 - 3204652
Alignment:
Q  218 tatgaaaacagtttgactttattttatcttttatt 252  Q
    ||||||||||||| |||||||||||||||||||||    
T  3204618 tatgaaaacagttcgactttattttatcttttatt 3204652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 31672542 - 31672575
Alignment:
Q  216 cttatgaaaacagtttgactttattttatctttt 249  Q
    ||||||||||||||||||||||||||||| ||||    
T  31672542 cttatgaaaacagtttgactttattttatttttt 31672575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 31964669 - 31964706
Alignment:
Q  216 cttatgaaaacagttt-gactttattttatcttttatt 252  Q
    |||||||||||||||| |||||||||||||||||||||    
T  31964669 cttatgaaaacagttttgactttattttatcttttatt 31964706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 323805 - 323773
Alignment:
Q  218 tatgaaaacagtttgactttattttatctttta 250  Q
    |||||||||||||||| ||||||||||||||||    
T  323805 tatgaaaacagtttgaatttattttatctttta 323773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 249
Target Start/End: Complemental strand, 14295500 - 14295469
Alignment:
Q  218 tatgaaaacagtttgactttattttatctttt 249  Q
    ||||||||||||||||||||||||||||||||    
T  14295500 tatgaaaacagtttgactttattttatctttt 14295469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 249
Target Start/End: Original strand, 28586842 - 28586873
Alignment:
Q  218 tatgaaaacagtttgactttattttatctttt 249  Q
    ||||||||||||||||||||||||||||||||    
T  28586842 tatgaaaacagtttgactttattttatctttt 28586873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 251
Target Start/End: Original strand, 38831535 - 38831565
Alignment:
Q  221 gaaaacagtttgactttattttatcttttat 251  Q
    |||||||||||||||||||||||||||||||    
T  38831535 gaaaacagtttgactttattttatcttttat 38831565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 41277426 - 41277456
Alignment:
Q  218 tatgaaaacagtttgactttattttatcttt 248  Q
    |||||||||||||||||||||||||||||||    
T  41277426 tatgaaaacagtttgactttattttatcttt 41277456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 583849 - 583878
Alignment:
Q  218 tatgaaaacagtttgactttattttatctt 247  Q
    ||||||||||||||||||||||||||||||    
T  583849 tatgaaaacagtttgactttattttatctt 583878  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 249
Target Start/End: Complemental strand, 985625 - 985596
Alignment:
Q  220 tgaaaacagtttgactttattttatctttt 249  Q
    ||||||||||||||||||||||||||||||    
T  985625 tgaaaacagtttgactttattttatctttt 985596  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 17369354 - 17369309
Alignment:
Q  92 tgtttggattgacttatatgatcttatcaactgaaataatcacttg 137  Q
    ||||||||||||||||| ||| |||||| ||||| |||||||||||    
T  17369354 tgtttggattgacttatttgaacttatctactgacataatcacttg 17369309  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 32059665 - 32059694
Alignment:
Q  218 tatgaaaacagtttgactttattttatctt 247  Q
    ||||||||||||||||||||||||||||||    
T  32059665 tatgaaaacagtttgactttattttatctt 32059694  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 29117009 - 29117037
Alignment:
Q  221 gaaaacagtttgactttattttatctttt 249  Q
    |||||||||||||||||||||||||||||    
T  29117009 gaaaacagtttgactttattttatctttt 29117037  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 249
Target Start/End: Complemental strand, 15360888 - 15360857
Alignment:
Q  218 tatgaaaacagtttgactttattttatctttt 249  Q
    ||||||||||||||||||||||||||||||||    
T  15360888 tatgaaaacagtttgactttattttatctttt 15360857  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 249
Target Start/End: Original strand, 12477364 - 12477394
Alignment:
Q  219 atgaaaacagtttgactttattttatctttt 249  Q
    |||||||||||||||||||||||||||||||    
T  12477364 atgaaaacagtttgactttattttatctttt 12477394  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 14737779 - 14737812
Alignment:
Q  216 cttatgaaaacagtttgactttattttatctttt 249  Q
    |||||||||||| |||||||||||||||||||||    
T  14737779 cttatgaaaacaatttgactttattttatctttt 14737812  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 23373364 - 23373397
Alignment:
Q  216 cttatgaaaacagtttgactttattttatctttt 249  Q
    ||||||||||||| ||||||||||||||||||||    
T  23373364 cttatgaaaacagattgactttattttatctttt 23373397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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