View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9897_low_8 (Length: 241)
Name: NF9897_low_8
Description: NF9897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9897_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 3652410 - 3652629
Alignment:
| Q |
6 |
gagaagcataggagttgaagcaaccctatttcactctaaaattgagatcagatccacctaacttctcttcaatgaccttggacaatttttcaaccattga |
105 |
Q |
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| T |
3652410 |
gagaaacataggagttgtagcaaccctatttcactctaaaattgagatcagatccacctaacttctcttcaatgaccttggacaatttttcaaccattga |
3652509 |
T |
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| Q |
106 |
aggtgaaagataattactccaatcaccaacttcaccttttctaaacaagaacttattctcaaagctccttccaaatgttcctgtcttatttatctccaac |
205 |
Q |
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| T |
3652510 |
aggtgaaagataattactccaatcaccaacttcaccttttctaaacaagaacttattctcaaagttccttccaaatgttcctgtattatttatctccaac |
3652609 |
T |
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| Q |
206 |
cccttcattttctcaaaact |
225 |
Q |
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|||||||||||||||||||| |
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| T |
3652610 |
cccttcattttctcaaaact |
3652629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 169
Target Start/End: Original strand, 4506131 - 4506242
Alignment:
| Q |
58 |
tccacctaacttctcttcaatgaccttggacaatttttcaaccattgaaggtgaaagataattactccaatcaccaacttcaccttttctaaacaagaac |
157 |
Q |
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| T |
4506131 |
tccacttaacttttcttctatgattttggatagtttttcttccattcaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac |
4506230 |
T |
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| Q |
158 |
ttattctcaaag |
169 |
Q |
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| T |
4506231 |
ttgttctcaaag |
4506242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 15751740 - 15751676
Alignment:
| Q |
65 |
aacttctcttcaatgaccttggacaatttttcaaccattgaaggtgaaagataattactccaatc |
129 |
Q |
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| T |
15751740 |
aacttctcttcaatgattttggatagtttttctaccattgaaggagaaaggtagttaatccaatc |
15751676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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