View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9898_high_2 (Length: 384)
Name: NF9898_high_2
Description: NF9898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9898_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 2 - 206
Target Start/End: Original strand, 40207593 - 40207795
Alignment:
| Q |
2 |
tatgcaacaattttttctaaattgtacatattttttggccaattttaaattatagttataaatacgaacaatatcatgagtttttattgaatgtcgaaat |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40207593 |
tatgcaacaattttttctaaattgtacatatattttggccaattttaaattgtagttataaatacgaacaatatcatgagttttcattgaatgtcgaaat |
40207692 |
T |
|
| Q |
102 |
taatagtaaatctcgattaaactcaactaaagattccatgtaaaaacacaaccatggaaagggaaacttaaaattccaccacatgtaattaaacaaaaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40207693 |
taatagtaaatctcgattaaactcaactaaagaatctatgt--aaacacaaccatggaaagggaaacttaaaattccaccacatgttattaaacaaaaaa |
40207790 |
T |
|
| Q |
202 |
ttgtt |
206 |
Q |
| |
|
||||| |
|
|
| T |
40207791 |
ttgtt |
40207795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 230 - 368
Target Start/End: Original strand, 40207796 - 40207935
Alignment:
| Q |
230 |
ttagttactctaaagtgaacaagtcacttgtaaaattgttactttacatgagccaaattaacnnnnnnn-tcaaggtaaatcgttaattaacaaatcaaa |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40207796 |
ttagttactctaaagtgaacaagtcacttgtaaaattgttactttagatgagccaaattaaccaaaaaaatcaaggtaaatcgttaattaacaaatcaaa |
40207895 |
T |
|
| Q |
329 |
gatgaatattgttagaattagttggaataacatttaaggt |
368 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
40207896 |
gatgaatattgttagaattagttggaatatcgtttaaggt |
40207935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University