View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9898_high_7 (Length: 250)
Name: NF9898_high_7
Description: NF9898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9898_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 34676119 - 34675883
Alignment:
| Q |
1 |
cttttcttaaagtgtaaggacaagagtagatatggtaacaaagtaggta----tagtggtggtgttagttagttagttggttaagtgtgggagaagggag |
96 |
Q |
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| T |
34676119 |
cttttcttaaagtgtaaggacaagagtagatatggtaacaaagtaggtaggtatagtggtggtgttagttagtt----ggttaagtgtgggagaagggag |
34676024 |
T |
|
| Q |
97 |
gtaatgaattatgaaaagcaaagaattttttgcttaattagctaatacattatgatgaaattaaggaattattttttgaggtatgatatgatgtaaagta |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34676023 |
gtaatgaattatgaaaagcaaagaattttttgcttaattagctaatacattataatgaaattaaggaattattttttgaggtatgatatgatgtaaagta |
34675924 |
T |
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| Q |
197 |
agtcaaataagtttgttgtgacatgtttgttgggtatgtct |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
34675923 |
agtcaaataagtttgttgtgacatgtttgttgggtatgtct |
34675883 |
T |
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