View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9898_low_1 (Length: 489)
Name: NF9898_low_1
Description: NF9898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9898_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 2925566 - 2925097
Alignment:
| Q |
1 |
ataaacaaagatgcgaagatggtataggattaaattaaaacatggtaacataaccttttttgtaaggtcggattcatgctgcttcctaagattctctgat |
100 |
Q |
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| T |
2925566 |
ataaacaaagatgcgaagatggtataggattaaattaaaacatggtaacataaccttttttgtaaagtcggattcatgctgcttcctaagattctctgat |
2925467 |
T |
|
| Q |
101 |
ttcaaatcttatatattgacaaaatccccttttgnnnnnnnnngcattggaagcttatgttgtgttactctctactctgatgatgcataagaagccaaaa |
200 |
Q |
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| T |
2925466 |
ttcaaatcttatatattgacaaaatccccttttgtttttttttgcattggaagcttatgttatgttactctctactctcatgatgcataagaagccaaaa |
2925367 |
T |
|
| Q |
201 |
gcagtttggaagtattgcacgcatttaatatcattatttagaagcttacatttggtgacaaatattcattgcaagacaattccacatttgcgaaatcatc |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2925366 |
gcagtttggaagcattgcacgcatttaatatcattatttagaagcttacatttggtgacaaatattcattgcaagacaattccacatttgcgaaatcatc |
2925267 |
T |
|
| Q |
301 |
aagttaaaaaggaaacactttaattccaggttcaactttatgccaaaaagcctgttaatacttttcaacatttaagatatgtaataccagcttgtaaatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2925266 |
aagttaaaaaggaaacactttaattccaggttcaactttatgccaaaaagcctgtttatacttttcaacatttaagatatgtaataccagcttgtaaatc |
2925167 |
T |
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| Q |
401 |
ccttctaagttctaatgaatgaactatgaaaaagatcttcggtccatattatcgaagttcttatcaataa |
470 |
Q |
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| T |
2925166 |
ccttctaagttctaatgaatgaactacgaaaaagatcttcggtccatattaccgaagttcttatcaataa |
2925097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 370 - 468
Target Start/End: Original strand, 9170007 - 9170106
Alignment:
| Q |
370 |
atttaagatatgtaataccagcttgtaaatcccttctaagttctaatgaatg-aactatgaaaaagatcttcggtccatattatcgaagttcttatcaat |
468 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||| || |||||||| || ||||| ||||||||| |
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| T |
9170007 |
attttagatatgtaatatcagcttgtaaatcccttcaaagttctaatgaatgaaactatgaaaaagacatttggtccataataccgaagaccttatcaat |
9170106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 435
Target Start/End: Original strand, 33538397 - 33538439
Alignment:
| Q |
393 |
tgtaaatcccttctaagttctaatgaatgaactatgaaaaaga |
435 |
Q |
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| T |
33538397 |
tgtaaattccttctaggttctaatgaatgaactatgaataaga |
33538439 |
T |
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