View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9898_low_11 (Length: 243)
Name: NF9898_low_11
Description: NF9898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9898_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 34676108 - 34676331
Alignment:
| Q |
1 |
ctttaagaaaagtaacacttttttatgtacatgattataaattttgatcaatttcatgagccacaacaactaaaagtaggtaatatagacttactcctaa |
100 |
Q |
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| T |
34676108 |
ctttaagaaaagtaacacttttttatgtacatgattataaattttgatcaatttcatgagccacaacaactaaaagtaggtaatatagacttactcctaa |
34676207 |
T |
|
| Q |
101 |
gtagttaaaggcttgcttagtcaccccctcctttaacttccatcataaatattgtttcaattgtttctttgcaactatagtttatgatcttaagttaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34676208 |
gtagttaaaggcttgcttagtcaccccctcctttaacttccatcataaatattgtttcaattgtttctttgcaactatagtttatgatcttaagttaaga |
34676307 |
T |
|
| Q |
201 |
aaaagaagaagaatgagtactgct |
224 |
Q |
| |
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|||| ||||||||||||||||||| |
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| T |
34676308 |
aaaacaagaagaatgagtactgct |
34676331 |
T |
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