View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9898_low_12 (Length: 226)

Name: NF9898_low_12
Description: NF9898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9898_low_12
NF9898_low_12
[»] chr6 (4 HSPs)
chr6 (12-211)||(23809514-23809713)
chr6 (12-211)||(2628017-2628216)
chr6 (12-211)||(22978690-22978889)
chr6 (148-211)||(18985450-18985511)
[»] chr8 (1 HSPs)
chr8 (148-211)||(30344266-30344327)
[»] chr5 (1 HSPs)
chr5 (148-211)||(23920006-23920067)
[»] chr3 (2 HSPs)
chr3 (44-75)||(17501371-17501402)
chr3 (12-46)||(17501552-17501586)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 23809514 - 23809713
Alignment:
Q  12 tttggtgttaggattgcaaatctacttgcttatacattattttgtcctctctttattgcaacaggaatctctctctgcttatgctaaaaatgatttggat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23809514 tttggtgttaggattgcaaatctacttgcttatacattattttgtcctctctttattgcaacaggaatctctctctgcttatgctaaaaatgatttggat 23809613  T
Q  112 ctggctgggagctgcactcctgcaaatgtgttaacaatgtataatttgtataatatttcgatgactatgtgttgaaattatggtttggatatagtaatcc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23809614 ctggctgggagctgcactcctgcaaatgtgttaacaatgtataatttgtataatatttcgatgactatgtgttgaaattatggtttggatatagtaatcc 23809713  T

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Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 2628216 - 2628017
Alignment:
Q  12 tttggtgttaggattgcaaatctacttgcttatacattattttgtcctctctttattgcaacaggaatctctctctgcttatgctaaaaatgatttggat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2628216 tttggtgttaggattgcaaatctacttgcttatacattattttgtcctctctttattgcaacaggaatctctctctgcttatgctaaaaatgatttggat 2628117  T
Q  112 ctggctgggagctgcactcctgcaaatgtgttaacaatgtataatttgtataatatttcgatgactatgtgttgaaattatggtttggatatagtaatcc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2628116 ctggctgggagctgcactcctgcaaatgtgttaacaatgtataatttgtataatatttcgatgactgtgtgttgaaattatggtttggatatagtaatcc 2628017  T

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Target: chr6; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 22978889 - 22978690
Alignment:
Q  12 tttggtgttaggattgcaaatctacttgcttatacattattttgtcctctctttattgcaacaggaatctctctctgcttatgctaaaaatgatttggat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22978889 tttggtgttaggattgcaaatctacttgcttatacattattttgtcctctctttattgcaacaggaatctctctctgcttatgctaaaaatgatttggat 22978790  T
Q  112 ctggctgggagctgcactcctgcaaatgtgttaacaatgtataatttgtataatatttcgatgactatgtgttgaaattatggtttggatatagtaatcc 211  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22978789 ctggctgggaactgcactcctgcaaatgtgttaacaatgtataatttgtataatatttcgatgactatgtgttgaaattatggtttggatatagtaatcc 22978690  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 18985511 - 18985450
Alignment:
Q  148 atgtataatttgtataatatttcgatgactatgtgttgaaattatggtttggatatagtaatcc 211  Q
    ||||||| ||||||||||||||||||||| |||| |||||  | |||||||||| |||||||||    
T  18985511 atgtatattttgtataatatttcgatgacaatgttttgaa--tgtggtttggatttagtaatcc 18985450  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 30344266 - 30344327
Alignment:
Q  148 atgtataatttgtataatatttcgatgactatgtgttgaaattatggtttggatatagtaatcc 211  Q
    ||||||| ||||||||||||||||||||| |||| |||||  | |||||||||| |||||||||    
T  30344266 atgtatattttgtataatatttcgatgacaatgttttgaa--tgtggtttggatttagtaatcc 30344327  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 23920006 - 23920067
Alignment:
Q  148 atgtataatttgtataatatttcgatgactatgtgttgaaattatggtttggatatagtaatcc 211  Q
    ||||||| ||||||||||||||||||||| |||| |||||  | |||||||||| |||||||||    
T  23920006 atgtatattttgtataatatttcgatgacaatgttttgaa--tgtggtttggatttagtaatcc 23920067  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 17501402 - 17501371
Alignment:
Q  44 tacattattttgtcctctctttattgcaacag 75  Q
    ||||||||||||||||||||||||||||||||    
T  17501402 tacattattttgtcctctctttattgcaacag 17501371  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 17501586 - 17501552
Alignment:
Q  12 tttggtgttaggattgcaaatctacttgcttatac 46  Q
    |||||||| ||||||||||||||||||||||||||    
T  17501586 tttggtgtcaggattgcaaatctacttgcttatac 17501552  T

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