View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9898_low_4 (Length: 338)
Name: NF9898_low_4
Description: NF9898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9898_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 40207426 - 40207099
Alignment:
| Q |
1 |
aacttgtgttgtgttgtgtatgtatattttaaattgaaattaattaatttggtaatattaaataattgtaggaggacacattaatccggctgtgaccttt |
100 |
Q |
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| T |
40207426 |
aacttgtgttgtgttgtgtatgtatatttttaattgaaattaattaatttggtaatattaaataattgtaggaggacacattaatccggctgtgaccttt |
40207327 |
T |
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| Q |
101 |
gggctatttgtgggacgcaaggtgtctttaataagggcattcctatacatagttgcacaatgtttaggagcaatttgtggtgctggacttgcaaaggggt |
200 |
Q |
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| T |
40207326 |
gggctatttgtgggacgcaaggtgtctttaataagggcattcctatacatagttgcacaatgtttaggagcaatttgtggtgctggacttgcaaaggggt |
40207227 |
T |
|
| Q |
201 |
tccaaacatcatactacaacaggtacaaaggaggagttaacactgtttctgatggttacagcaaaggcactgctttaggtgctgaaattattggtacctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40207226 |
tccaaacatcatactacaacaggtacaaaggaggagttaacactgtttctgatggttacagcaaaggcactgctttaggtgctgaaattattggtacctt |
40207127 |
T |
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| Q |
301 |
tgttttggtctacactgttttctctgct |
328 |
Q |
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| T |
40207126 |
tgttttggtctacactgttttctctgct |
40207099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 21793780 - 21793857
Alignment:
| Q |
250 |
tgatggttacagcaaaggcactgctttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgc |
327 |
Q |
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| T |
21793780 |
tgatggctacaacaaaggcacagctttaggtgctgaaatcattggtacctttgttcttgtctacactgtcttctctgc |
21793857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 55220931 - 55221005
Alignment:
| Q |
254 |
ggttacagcaaaggcactgctttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgct |
328 |
Q |
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| T |
55220931 |
ggttacagcaaaggctctgccctaggtgctgaaatgatcggaacttttgtgttggtttacactgttttctctgct |
55221005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 42796516 - 42796568
Alignment:
| Q |
275 |
ttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgc |
327 |
Q |
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| T |
42796516 |
ttaggtgctgagattgttggtacctttgttttggtttacaccgttttctctgc |
42796568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 327
Target Start/End: Complemental strand, 40835422 - 40835165
Alignment:
| Q |
70 |
aggaggacacattaatccggctgtgacctttgggctatttgtgggacgcaaggtgtctttaataagggcattcctatacatagttgcacaatgtttagga |
169 |
Q |
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| T |
40835422 |
aggaggacacataaatccggcggtgacatttgggctatttctggcgaggaaggtgtcattgattagagctgtattatacatggtagctcagtgtttagga |
40835323 |
T |
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| Q |
170 |
gcaatttgtggtgctggacttgcaaaggggttccaaacatcatactacaacaggtacaaaggaggagttaacactgtttc-tgatggttacagcaaaggc |
268 |
Q |
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| T |
40835322 |
gcaatatgtggtgttggactggttaaggcttttcagaaaggttactataataggtacaaaggtggtgctaaca-tgttaagtgctggttatagcaaagga |
40835224 |
T |
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| Q |
269 |
actgctttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgc |
327 |
Q |
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|||| |||||||||||||| ||||| ||||||||| | || ||||| || |||||||| |
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| T |
40835223 |
actgggttaggtgctgaaataattggaacctttgttcttgtttacaccgtgttctctgc |
40835165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 281 - 328
Target Start/End: Original strand, 41037332 - 41037379
Alignment:
| Q |
281 |
gctgaaattattggtacctttgttttggtctacactgttttctctgct |
328 |
Q |
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| T |
41037332 |
gctgagattgttggtacctttgttcttgtctacactgttttctctgct |
41037379 |
T |
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