View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9898_low_5 (Length: 277)

Name: NF9898_low_5
Description: NF9898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9898_low_5
NF9898_low_5
[»] chr5 (1 HSPs)
chr5 (1-256)||(23086487-23086742)
[»] chr7 (6 HSPs)
chr7 (30-111)||(26256625-26256706)
chr7 (35-106)||(26217822-26217893)
chr7 (35-106)||(26230072-26230143)
chr7 (30-111)||(26237464-26237545)
chr7 (30-129)||(24016621-24016719)
chr7 (173-214)||(19604745-19604786)
[»] chr3 (3 HSPs)
chr3 (30-100)||(36339976-36340046)
chr3 (30-100)||(25915436-25915506)
chr3 (30-100)||(25901418-25901488)
[»] chr1 (1 HSPs)
chr1 (30-91)||(17953800-17953861)
[»] chr6 (2 HSPs)
chr6 (1-111)||(19746804-19746914)
chr6 (30-106)||(33568839-33568915)
[»] scaffold0707 (1 HSPs)
scaffold0707 (30-106)||(5233-5309)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 23086742 - 23086487
Alignment:
Q  1 tcagaacatgaagagatggctgatattccggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaat 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23086742 tcagaacatgaagagatggctgatattctggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgatagatcaagcgaaacaat 23086643  T
Q  101 gacaaactgcttagcattagtgatagacttccaaccatgttcataagacggcataaggaaatcggggagacacaaccagttaacagtaccattcacatgc 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  23086642 gacaaactgcttagcattagtaatagacttccaaccatgttcataagacggcataaggaaatcggggagacacaaccaattaacagtaccattcaaatgc 23086543  T
Q  201 acaccattattaatccgattaatgagaatattcattacacaaaccggaatcaaagg 256  Q
    || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  23086542 acgccattattaattcgattaatgagaatattcattacacaaacaggaatcaaagg 23086487  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 26256706 - 26256625
Alignment:
Q  30 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaactgct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||    
T  26256706 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaataatcacaaattgct 26256625  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 26217893 - 26217822
Alignment:
Q  35 ctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  26217893 ctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaataatcacaaa 26217822  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 26230143 - 26230072
Alignment:
Q  35 ctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaa 106  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  26230143 ctcatcaaagccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaataatcacaaa 26230072  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 26237545 - 26237464
Alignment:
Q  30 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaactgct 111  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||  || |||||||||||||||| ||| ||||| ||||    
T  26237545 ggcacctcatcaaaaccttgaggcaacaacaactgtttgtatgtctttgtcgaaagatcaagcgaaagaatcacaaattgct 26237464  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 24016719 - 24016621
Alignment:
Q  30 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaactgcttagcattagtgatagact 129  Q
    |||||||| ||||| ||||||| |||||  |||||||||||||||||||| ||||||||||| |||||||| ||||| || ||| |||| || |||||||    
T  24016719 ggcacctcgtcaaatccttgag-cagcagaaactgcttgtatgtctccgtcgaaagatcaagagaaacaatcacaaattgtttaacattggtaatagact 24016621  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 19604745 - 19604786
Alignment:
Q  173 caaccagttaacagtaccattcacatgcacaccattattaat 214  Q
    ||||||||||| ||||||| |||||| |||||||||||||||    
T  19604745 caaccagttaagagtaccactcacatacacaccattattaat 19604786  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 36340046 - 36339976
Alignment:
Q  30 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaat 100  Q
    |||||||| | |||||||  ||| ||||| |||||| ||||||||||||| ||||||||||||||||||||    
T  36340046 ggcacctccttaaaacctgcaggaagcaaaaactgcctgtatgtctccgtcgaaagatcaagcgaaacaat 36339976  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 25915436 - 25915506
Alignment:
Q  30 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaat 100  Q
    |||||||| ||||||||  ||||||||||||||||  |||||| ||| || || |||||||||||||||||    
T  25915436 ggcacctcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaat 25915506  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 25901418 - 25901488
Alignment:
Q  30 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaat 100  Q
    |||||||| ||||||||  |||| |||||||||||  |||||| ||| || || |||||||||||||||||    
T  25901418 ggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaat 25901488  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 17953800 - 17953861
Alignment:
Q  30 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaag 91  Q
    |||||||||||||||||||||||||| |||| || |||| ||||||| || |||||||||||    
T  17953800 ggcacctcatcaaaaccttgaggcagtaacagcttcttgaatgtctctgtcgaaagatcaag 17953861  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 19746804 - 19746914
Alignment:
Q  1 tcagaacatgaagagatggctgatattccggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaat 100  Q
    ||||||||||||||| ||||||| | |  || || |||||||||||    |||||||| || ||  |||||||||| || ||||||||||| ||||||||    
T  19746804 tcagaacatgaagagttggctgaaagtgtgggacttcatcaaaaccaaatggcagcaaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaat 19746903  T
Q  101 gacaaactgct 111  Q
     ||||| ||||    
T  19746904 cacaaattgct 19746914  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 33568915 - 33568839
Alignment:
Q  30 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaa 106  Q
    |||||||||| |||||| | ||| ||||| || ||  ||||||||||||  ||||||||||| |||||||| |||||    
T  33568915 ggcacctcattaaaacccttaggaagcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcacaaa 33568839  T

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Target: scaffold0707 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 5309 - 5233
Alignment:
Q  30 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaa 106  Q
    |||||||||| |||||| | ||| ||||| || ||  ||||||||||||  ||||||||||| |||||||| |||||    
T  5309 ggcacctcattaaaacccttaggaagcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcacaaa 5233  T

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