View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9898_low_9 (Length: 250)
Name: NF9898_low_9
Description: NF9898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9898_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 47124570 - 47124326
Alignment:
| Q |
8 |
aagcaaaggactcttttcatgaatccaatctttttgtaagacatcgaatcaaaatcacacaatctaattggtccaagtcatcatataatctcatccacat |
107 |
Q |
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| T |
47124570 |
aagcaaaggactcttttcatgaatccaatctttttgtaagacatcgaatcaaaatcacacaatctaattggtccaagtcatcatataatctcatccacat |
47124471 |
T |
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| Q |
108 |
caacaacactcttccaaaatcattaacttacaaactagtacta--gtgatattgatctttcacaagcccaacacactttcctcgcaatactacaagcaac |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47124470 |
caacaacactcttccaaaatcattaacttacaaactagtactagtgtgatattgatctttcacaagcccaacacactttcctcgcaatactacaagcaac |
47124371 |
T |
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| Q |
206 |
atttgtatccaactcacaatggccatggcaactcaaaccaccctc |
250 |
Q |
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| T |
47124370 |
atttgtatccaactcacaatggccatggcaactcaaaccaccctc |
47124326 |
T |
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