View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9900_high_1 (Length: 472)

Name: NF9900_high_1
Description: NF9900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9900_high_1
NF9900_high_1
[»] chr1 (5 HSPs)
chr1 (27-455)||(246174-246602)
chr1 (84-347)||(251895-252152)
chr1 (27-242)||(230970-231190)
chr1 (120-254)||(8814781-8814913)
chr1 (307-368)||(234781-234844)
[»] chr3 (6 HSPs)
chr3 (133-279)||(9340029-9340166)
chr3 (123-289)||(9495475-9495640)
chr3 (27-76)||(8060942-8060991)
chr3 (135-265)||(9335217-9335345)
chr3 (193-242)||(9401917-9401966)
chr3 (193-242)||(9432410-9432459)
[»] chr6 (6 HSPs)
chr6 (202-280)||(7046438-7046514)
chr6 (197-265)||(9159841-9159907)
chr6 (307-358)||(213546-213597)
chr6 (216-309)||(213647-213738)
chr6 (196-242)||(7040933-7040979)
chr6 (204-265)||(9170528-9170587)


Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 27 - 455
Target Start/End: Original strand, 246174 - 246602
Alignment:
Q  27 taatacaagtaatcaacgtcaaatcaaagtaacagaacgcaactttcttaattaagagagttaaagaaactgttagaatgtgtatccggcaaccccaatt 126  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  246174 taatacaagtaatcaacatcaaatcaaaataacagaacgcaactttcttacttaagagagttaaagaaactgttagaatgtgtatccggcaaccccaatt 246273  T
Q  127 ccactacattttccaacatcttttcatatgactatgtaattaggattcagaggtttgttgcaaagtatatagtccgcaaaaggaacaataaaagaagata 226  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||  |||||||| |||||||||||||||||||||| |||||||||||    
T  246274 ccactacattttccaacatcttttcgtatgaatatgtaattaggattcaggggttcattgcaaagcatatagtccgcaaaaggaacaacaaaagaagata 246373  T
Q  227 atcaaacccatcaacacattgttaaatctagtttagaaaattcataatgataacttgtcatggtgatgtctttaatatattcaaatagatccagatttca 326  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  246374 atcaaacccatcaacacatggttaaatctagtttagaaaatccataatgataacttgccatggtgatgtctttaatatattcaaatagatccagatttca 246473  T
Q  327 ataaaagctaattgcatatgagaaaaagaaaattaaatgaagtgaaatatacttatttacagaaaacatattagttaggaaaatccgtagtcaatgtaac 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  246474 ataaaagctaattgcatatgagaaaaagaaaattaaatgaagtgaaatatacttatttacagaaaacatatcagttaggaaaatccgtagtcaatgtaac 246573  T
Q  427 attacaatttttcttgttctacaagtact 455  Q
    |||||||||||||||||||||||||||||    
T  246574 attacaatttttcttgttctacaagtact 246602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 84 - 347
Target Start/End: Complemental strand, 252152 - 251895
Alignment:
Q  84 gagttaaagaaactgttagaatgtgtatccggcaaccccaa-ttccactacattttccaacatcttttcatatgactatgtaattaggattcagaggttt 182  Q
    ||||| ||||||||||||||| |  ||||||||||||| || ||||||  ||||||||| ||||||||||||||| |||||||||||||||||| |||||    
T  252152 gagttgaagaaactgttagaacgcttatccggcaacccaaaattccacctcattttccagcatcttttcatatgaatatgtaattaggattcaggggttt 252053  T
Q  183 gttgcaaagtatatagtccgcaaaaggaacaataaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaaattcataatgataactt 282  Q
     || ||||| |||||||| ||||||||||||| ||||||||||||||||||       | ||||||||||||| |||| |||||||||||||||||||||    
T  252052 ctttcaaagcatatagtctgcaaaaggaacaacaaaagaagataatcaaac-------ctcattgttaaatctggttttgaaaattcataatgataactt 251960  T
Q  283 gtcatggtgatgtctttaatatattcaaatagatccagatttcaataaaagctaattgcatatga 347  Q
    | ||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||    
T  251959 gccatggtgatgtcttgcatatattcaaatagatccagatttcagtaaaagctaattgcatatga 251895  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 242
Target Start/End: Original strand, 230970 - 231190
Alignment:
Q  27 taatacaagtaatcaacgtcaaatcaaagtaacagaacgcaactttcttaattaagagagttaaagaaactgttagaatgtgtatccggcaaccccaatt 126  Q
    |||| |||||| ||||| |||||||||| ||||| ||| | ||||||| ||  | |||||||  |||||| |||  || |  |||||||||| || ||||    
T  230970 taatgcaagtagtcaacatcaaatcaaaataacataacacgactttctaaaacaggagagttgcagaaaccgttcaaacgcttatccggcaaaccaaatt 231069  T
Q  127 ccactacattttccaacatcttttcatatgactatgtaattaggattcagaggtttgttgcaaagtatatagtccgcaaaaggaac-----aataaaaga 221  Q
    ||||  | ||||||| ||||||||||||||| | ||||||||||||| ||  |   ||||||||  |||||||| |||||||||||     |||||||||    
T  231070 ccacctcgttttccagcatcttttcatatgaatgtgtaattaggatttaggagaccgttgcaaaacatatagtctgcaaaaggaacaataaaataaaaga 231169  T
Q  222 agataatcaaacccatcaaca 242  Q
    |||||||||||||||||||||    
T  231170 agataatcaaacccatcaaca 231190  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 254
Target Start/End: Complemental strand, 8814913 - 8814781
Alignment:
Q  120 cccaattccactacattttccaacatcttttcatatgactatgtaattagga-ttcagaggtttgttgcaaagtatatagtccgcaaaaggaacaataaa 218  Q
    ||||||||||   ||||||||| ||||||||||||||| ||||||||||||| || |||| |||||  ||||| |||||| | |||| ||||||||||||    
T  8814913 cccaattccatctcattttccagcatcttttcatatgaatatgtaattaggacttaagag-tttgtcacaaagcatatagcctgcaagaggaacaataaa 8814815  T
Q  219 agaagataatcaaacccatcaacacattgttaaatc 254  Q
    ||||| ||| |||||||||||  |||||||||||||    
T  8814814 agaagctaaacaaacccatca--acattgttaaatc 8814781  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 234781 - 234844
Alignment:
Q  307 tcaaatagatccagatttcaataaaagcta---attgcatatgagaaaaagaaaattaaatgaag 368  Q
    |||||||||||||||||||| |||||||||   ||||||||||| ||||||||| ||||||||||    
T  234781 tcaaatagatccagatttcagtaaaagctaattattgcatatga-aaaaagaaatttaaatgaag 234844  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 279
Target Start/End: Original strand, 9340029 - 9340166
Alignment:
Q  133 cattttccaacatcttttcatatgactatgtaattaggattcagaggtttgttgcaaagtatatagtccgcaaaaggaacaataaaagaagataatcaaa 232  Q
    ||||||||| |||||||| |||||| |||| ||||||||       ||||||||  ||  |||||||| ||||||| |||||| ||||||||||||||||    
T  9340029 cattttccagcatcttttgatatgaatatgcaattagga-------gtttgttggtaaacatatagtctgcaaaagtaacaatgaaagaagataatcaaa 9340121  T
Q  233 cccatcaacacattgttaaatctagtttagaaaattcataatgataa 279  Q
    |||| ||  ||||||||| |||||||||||||| |||||||| ||||    
T  9340122 cccaaca--acattgttacatctagtttagaaagttcataataataa 9340166  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 289
Target Start/End: Complemental strand, 9495640 - 9495475
Alignment:
Q  123 aattccactacattttccaacatcttttcatatgactatgtaattaggattcagaggtttgttgcaaagtatatagtccgcaaaaggaacaa-taaaaga 221  Q
    ||||||||  |||||| || ||||| |||||||||  ||||||| | || | ||  ||||||||  ||  |||||||| ||||||||||||| |||||||    
T  9495640 aattccacctcattttgcagcatctcttcatatgaacatgtaatcacgaattaggagtttgttggtaaacatatagtctgcaaaaggaacaaataaaaga 9495541  T
Q  222 agataatcaaacccatcaacacattgttaaatctagtttagaaaattcataatgataacttgtcatgg 289  Q
    |||||| |||||  | |||||  |||||||||||| || ||||| |||||||| ||||||||||||||    
T  9495540 agataaacaaacaaaccaaca--ttgttaaatctatttcagaaacttcataataataacttgtcatgg 9495475  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 8060942 - 8060991
Alignment:
Q  27 taatacaagtaatcaacgtcaaatcaaagtaacagaacgcaactttctta 76  Q
    ||||||||||| ||||| |||||||||| ||||||||| |||||||||||    
T  8060942 taatacaagtagtcaacatcaaatcaaaataacagaacacaactttctta 8060991  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 265
Target Start/End: Original strand, 9335217 - 9335345
Alignment:
Q  135 ttttccaacatcttttcatatgactatgtaattaggattcagaggtttgttgcaaagtatatagtccgcaaaaggaacaataaaagaagataatcaaacc 234  Q
    ||||||| ||||||||||| ||| |||||||||| || | |||  ||  |||| ||  || | ||| | ||||| | ||||||||||||||||||||||     
T  9335217 ttttccagcatcttttcatctgaatatgtaattaagaattagaaattcattgctaaacatgttgtctggaaaagtagcaataaaagaagataatcaaact 9335316  T
Q  235 catcaacacattgttaaatctagtttagaaa 265  Q
    |||||  ||| ||||| ||||||||||||||    
T  9335317 catca--acaatgttacatctagtttagaaa 9335345  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 9401917 - 9401966
Alignment:
Q  193 atatagtccgcaaaaggaacaataaaagaagataatcaaacccatcaaca 242  Q
    |||||||| ||||||| |||||||||||||||| ||||| | ||||||||    
T  9401917 atatagtctgcaaaagtaacaataaaagaagatgatcaagctcatcaaca 9401966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 9432410 - 9432459
Alignment:
Q  193 atatagtccgcaaaaggaacaataaaagaagataatcaaacccatcaaca 242  Q
    |||||||| ||||||| |||||||||||||||| ||||| | ||||||||    
T  9432410 atatagtctgcaaaagtaacaataaaagaagatgatcaagctcatcaaca 9432459  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 280
Target Start/End: Original strand, 7046438 - 7046514
Alignment:
Q  202 gcaaaaggaacaataaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaaattcataatgataac 280  Q
    ||||||| |||||||||||||||||||||| |||| ||  ||||||| | |||||||||||||| |||||||| |||||    
T  7046438 gcaaaagtaacaataaaagaagataatcaagcccagca--acattgtcatatctagtttagaaacttcataataataac 7046514  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 9159907 - 9159841
Alignment:
Q  197 agtccgcaaaaggaacaataaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaa 265  Q
    |||| ||||||| |||||||||||||||||||||| | |||||  ||||||||| ||||||||||||||    
T  9159907 agtctgcaaaagtaacaataaaagaagataatcaagctcatca--acattgttacatctagtttagaaa 9159841  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 213597 - 213546
Alignment:
Q  307 tcaaatagatccagatttcaataaaagctaattgcatatgagaaaaagaaaa 358  Q
    |||||||||||||||||||| ||||||||| |||||||||| ||||| ||||    
T  213597 tcaaatagatccagatttcagtaaaagctagttgcatatgaaaaaaaaaaaa 213546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 309
Target Start/End: Complemental strand, 213738 - 213647
Alignment:
Q  216 aaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaaattcataatgataacttgtcatggtgatgtctttaatatattca 309  Q
    |||||||||||  |||| |||||||||  ||||||  |  |||||||||| |||||||| ||||||||||||||||||||| |  |||||||||    
T  213738 aaaagaagatatccaaaaccatcaaca--ttgttaccttcagtttagaaacttcataataataacttgtcatggtgatgtcctgcatatattca 213647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 7040933 - 7040979
Alignment:
Q  196 tagtccgcaaaaggaacaataaaagaagataatcaaacccatcaaca 242  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  7040933 tagtctgcaaaagtaacaataaaagaagataatcaatcccatcaaca 7040979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 9170528 - 9170587
Alignment:
Q  204 aaaaggaacaataaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaa 265  Q
    ||||| |||||||||||||||||||||| | |||||  ||||||||| ||||||||||||||    
T  9170528 aaaagtaacaataaaagaagataatcaagctcatca--acattgttacatctagtttagaaa 9170587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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