View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9900_high_10 (Length: 206)
Name: NF9900_high_10
Description: NF9900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9900_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 46875993 - 46876169
Alignment:
| Q |
14 |
caaaggcataaagtacatgtgctgttggggaatcactaataatgcactagctagctttaggtgctgttgtatttgtatagataggtttgtgacttgtgag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46875993 |
caaaggcataaagtacatgtgctgttggggaatcactaataatgcactagctagctttaggtactgttgtatttgtatagataggtttgtgacttgtgag |
46876092 |
T |
|
| Q |
114 |
tagggttttctaatgattctgttacttatctaaacatctggtagggtaaaccaagctggtgaatagacagagtttct |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46876093 |
tagggttttctaatgattctgttacttatctaaacatctggtagggtaaaccaagctggtgaatagacagagtttct |
46876169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University