View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9900_high_8 (Length: 250)
Name: NF9900_high_8
Description: NF9900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9900_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 44000185 - 43999946
Alignment:
| Q |
1 |
ccttggcctaaaatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttgatgattacttatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44000185 |
ccttggcctaaaatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttgatgattacttatt |
44000086 |
T |
|
| Q |
101 |
aataactccttcaggaaagatgtcgtatattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctctggaggcatggaacaatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44000085 |
aataactccttcaggaaagatgtcgtatattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctctggaggcatggaacaatgg |
43999986 |
T |
|
| Q |
201 |
aaagctttatgaacaggctgccaaagctgaagtacctatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43999985 |
aaagctttatgaacaggctgccaaagctgaagtacctatg |
43999946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 39294192 - 39294304
Alignment:
| Q |
128 |
tattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctctggaggcatggaacaatggaaagctttatgaacaggctgccaaagc |
227 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
39294192 |
tattgctgcgttttgctgatttggttgagaagcacaatgccgagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagc |
39294291 |
T |
|
| Q |
228 |
tgaagtacctatg |
240 |
Q |
| |
|
| | ||||||||| |
|
|
| T |
39294292 |
taacgtacctatg |
39294304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 39294096 - 39294195
Alignment:
| Q |
1 |
ccttggcctaaaatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttgatgattacttatt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| ||| |||||| || ||||||||||||| ||||||| |
|
|
| T |
39294096 |
ccttgacctaaaatgagtgcttatgtaagcatttccttcagcgtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatgacttatt |
39294195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 128 - 240
Target Start/End: Complemental strand, 8357534 - 8357422
Alignment:
| Q |
128 |
tattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctctggaggcatggaacaatggaaagctttatgaacaggctgccaaagc |
227 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
8357534 |
tattgctgcgttttgctgatttggttgagaagcacaatgcttagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagc |
8357435 |
T |
|
| Q |
228 |
tgaagtacctatg |
240 |
Q |
| |
|
| | ||||||||| |
|
|
| T |
8357434 |
ttatgtacctatg |
8357422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 8357630 - 8357531
Alignment:
| Q |
1 |
ccttggcctaaaatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttgatgattacttatt |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| || ||||||||||||| ||||||| |
|
|
| T |
8357630 |
ccttggcctaaaatgaatgcttatgtaagcatttccttcagagtgtcctttcttacatgaacttatattagttttaaaattacgttgatgatgacttatt |
8357531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University