View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9900_low_1 (Length: 668)
Name: NF9900_low_1
Description: NF9900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9900_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 599; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 20 - 657
Target Start/End: Complemental strand, 46441616 - 46440978
Alignment:
| Q |
20 |
aatacgagtatcaacaccaaaaatatcattcaaatttaaattgttcaaaatttcacttatatctagtttaattagaagtgaaacatcataattttcatga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46441616 |
aatacgagtatcaacaccaaaaatatcattcaaatttaaattgttcaaaatttcacttatatctagtttaattagaagtgaaacatcataattttcatga |
46441517 |
T |
|
| Q |
120 |
gcattattaaaagaacttcctaattcattaacttggggcacaccaa-cttgttgtaaaataattgggataaaattaggagcaaagtatacctcttcagga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
46441516 |
gcattattaaaagaacttcctaattcattaacttggggcacaccaaacttgttgtaaaataattgggataaaattagtagcaaagtatacctcttctgga |
46441417 |
T |
|
| Q |
219 |
tgcaagtgagtaggaataacaccagctccatgaatatttgcaagacataactcttgctccttcatagccctgtgataattcagttgttcaatgatatcct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46441416 |
tgcaagtgagtaggaataacaccagctccatgaatatttgcaagatataactcttgctccttcatagccctgtgataattcagttgttcaatgatatccg |
46441317 |
T |
|
| Q |
319 |
taaaagctctaacacatacatcattgatgaacttggtgatgccattgatcacttcgaggcgtttttcatggaaaaacttgagtgtcacatttctacgcaa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46441316 |
taaaagctctaacacatacatcattgatgaacttggtgatgtcattgatcacttcgaggcgtttttcatggaaaaacttgagtgtcacatttctacgcaa |
46441217 |
T |
|
| Q |
419 |
gatgtgttgaatcaatggcaaatttgattcgagtacataaacgttagggcaatgagaactctctatgaaattaaggatgacaacaacctcatcagcaagg |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46441216 |
gatgtgttgaatcaatggcaaatttgattcgtgtacataaacgttagggcaatgagaactctctaggaaattaaggatgacaacaacctcatcagcaagg |
46441117 |
T |
|
| Q |
519 |
ttgtttagcattatgtccgaccaatgtgaaagaatatttgctactaaattaccatctttacttatccactcaatccacatcaagaaagccattacattta |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46441116 |
ttgtttagcattatgtccgaccaatgtgaaagaatatttgctactaaattaccatctttacttatccactcaatccacatcaagaaagccattacattta |
46441017 |
T |
|
| Q |
619 |
tcgattgaaaagcctcacggccaagccccaacaccaaac |
657 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46441016 |
tcgattgaaaagcctcacggccaagccccaccaccaaac |
46440978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 252 - 569
Target Start/End: Original strand, 18331264 - 18331581
Alignment:
| Q |
252 |
atatttgcaagacataactcttgctccttcatagccctgtgataattcagttgttcaatgatatccttaaaagctctaacacatacatcattgatgaact |
351 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||| ||| | |||||||| || |||||| ||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
18331264 |
atatttgcaagatataaatcttgctctttcatagtcctatcataattcattttttcaataatatctgtaaaagctctaacacatacatcattgatgatct |
18331363 |
T |
|
| Q |
352 |
tggtgatgccattgatcacttcgaggcgtttttcatggaaaaacttgagtgtcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgag |
451 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||| || |||||||| ||| |||||||||||||||||||||| || |||| | |
|
|
| T |
18331364 |
tggtgacaccagtgatcacttcgaggcgtttttcatggaaaaactcaagcgtcacattgaaacgacagatgtgttgaatcaatggcaacttcgatttgcc |
18331463 |
T |
|
| Q |
452 |
tacataaacgttagggcaatgagaactctctatgaaattaaggatgacaacaacctcatcagcaaggttgtttagcattatgtccgaccaatgtgaaaga |
551 |
Q |
| |
|
|||| || ||||||| |||| |||||| | ||| |||| |||||||||||| |||| |||||||||||| | ||||| | |||||||| ||| |||| |
|
|
| T |
18331464 |
tacaaaagtgttagggtaatgggaactcccaatgcaattcaggatgacaacagcctcgtcagcaaggttgctaagcataacatccgaccattgttgaaga |
18331563 |
T |
|
| Q |
552 |
atatttgctactaaatta |
569 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
18331564 |
atctttgctactaaatta |
18331581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 254 - 624
Target Start/End: Complemental strand, 17616584 - 17616215
Alignment:
| Q |
254 |
atttgcaagacataactcttgctccttcatagccctgtgataattcagttgttcaatgatatccttaaaagctctaacacatacatcattgatgaacttg |
353 |
Q |
| |
|
|||||||||| ||||||||| ||| |||| | |||||| | ||| || ||||||||| ||||| |||||||||||| ||| |||| ||| |||||||| |
|
|
| T |
17616584 |
atttgcaagatataactcttactctttcacaaccctgtca-aatgcacttgttcaattatatctgtaaaagctctaatacagacattattaatgaacttt |
17616486 |
T |
|
| Q |
354 |
gtgatgccattgatcacttcgaggcgtttttcatggaaaaacttgagtgtcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgagta |
453 |
Q |
| |
|
|||| || |||||| ||||||||||||||||||||||| | | |||||||| | ||||| ||| |||||||||||| |||| || || || |
|
|
| T |
17616485 |
gtgacatcaatgatcagctcgaggcgtttttcatggaaaaattcaaaagtcacattgcgacgcatgatttgttgaatcaatagcaacttatttttcctta |
17616386 |
T |
|
| Q |
454 |
cataaacgttagggcaatgagaactctctatgaaattaaggatgacaacaacctcatcagcaaggttgtttagcattatgtccgaccaatgtgaaagaat |
553 |
Q |
| |
|
| || ||||||| | |||||||||| ||| |||||||||| ||||||| |||||||||||| || ||||||| | | | ||||||| |||| | |
|
|
| T |
17616385 |
aaaaagagttagggtatcgagaactctcaatgcaattaaggattacaacaaactcatcagcaagactgcttagcatgacattaggccaatgttgaagagt |
17616286 |
T |
|
| Q |
554 |
atttgctactaaattaccatctttacttatccactcaatccacatcaagaaagccattacatttatcgatt |
624 |
Q |
| |
|
||||||||| ||||| | ||||||| | | |||||||| |||||||||||||||||| |||| |||| |
|
|
| T |
17616285 |
atttgctaccaaattgaattgtttactttttctttcaatccaaatcaagaaagccattacacttattgatt |
17616215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 303 - 624
Target Start/End: Original strand, 722669 - 722990
Alignment:
| Q |
303 |
tgttcaatgatatccttaaaagctctaacacatacatcattgatgaacttggtgatgccattgatcacttcgaggcgtttttcatggaaaaacttgagtg |
402 |
Q |
| |
|
|||||||| ||||| |||| ||||||| |||||| ||||||||| |||| |||| || |||||| |||||||||||||||||||||||||| || | |
|
|
| T |
722669 |
tgttcaataatatctgtaaacgctctaatacatacttcattgatgtactttgtgacatcagtgatcaattcgaggcgtttttcatggaaaaactcgaacg |
722768 |
T |
|
| Q |
403 |
tcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgagtacataaacgttagggcaatgagaactctctatgaaattaaggatgacaac |
502 |
Q |
| |
|
|| |||| |||| ||||||||||||||||| || || ||| |||| || | |||||| | |||||||| | ||| ||| |||||||| || |
|
|
| T |
722769 |
tcgcattgtggtgcaatatgtgttgaatcaatggtaatttcttttcccttacacaatcattagggtatggagaactcacaatgcaatcaaggatgaagac |
722868 |
T |
|
| Q |
503 |
aacctcatcagcaaggttgtttagcattatgtccgaccaatgtgaaagaatatttgctactaaattaccatctttacttatccactcaatccacatcaag |
602 |
Q |
| |
|
| | |||||||| || |||||||||| | || |||||||| ||||| |||||||| ||||| |||||||||||| |||||| ||||| | | |
|
|
| T |
722869 |
agcttcatcagctagcatgtttagcataacgtttgaccaatgcttgagaatctttgctaccaaattgaattctttacttatcatctcaatgcacataagg |
722968 |
T |
|
| Q |
603 |
aaagccattacatttatcgatt |
624 |
Q |
| |
|
|| ||||||||||| ||||||| |
|
|
| T |
722969 |
aaggccattacattgatcgatt |
722990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 302 - 529
Target Start/End: Complemental strand, 11574715 - 11574488
Alignment:
| Q |
302 |
ttgttcaatgatatccttaaaagctctaacacatacatcattgatgaacttggtgatgccattgatcacttcgaggcgtttttcatggaaaaacttgagt |
401 |
Q |
| |
|
||||||||| ||||||| ||||||| ||||||| ||||||||||| |||||||||| ||||||| |||||||||||||||| ||| ||||||| ||| |
|
|
| T |
11574715 |
ttgttcaataatatcctcaaaagctataacacacacatcattgattaacttggtgacatcattgattacttcgaggcgttttttatgaaaaaactcaagt |
11574616 |
T |
|
| Q |
402 |
gtcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgagtacataaacgttagggcaatgagaactctctatgaaattaaggatgacaa |
501 |
Q |
| |
|
|||| ||| | | ||| |||||||||||||||||||||||||||| | |||| || ||||||| |||||||| | || ||| |||| |||||||||| |
|
|
| T |
11574615 |
gtcaaattgcggcacaatatgtgttgaatcaatggcaaatttgattggcctacaaaagtgttagggtaatgagaaatttcgatgcaattcaggatgacaa |
11574516 |
T |
|
| Q |
502 |
caacctcatcagcaaggttgtttagcat |
529 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
11574515 |
caacctcatcagcaaggttgcttagcat |
11574488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University