View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9900_low_10 (Length: 256)
Name: NF9900_low_10
Description: NF9900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9900_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 34860414 - 34860584
Alignment:
| Q |
1 |
ccagctaatatctttagaataggcgactcttacatgccacaatattcaaattaacaacagaactaactcacagagtaacaaccgagaaaaattccaaata |
100 |
Q |
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| T |
34860414 |
ccagctaatatctttagaataggtgactcttacatgccacaatattcaaattaacaacagaactaactcacagagtaacaaccgagaaaaattccaaata |
34860513 |
T |
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| Q |
101 |
ccactctttgaagtctgctttttcagagaagtggtaaaaagatttgttgtatttaagtagggagatcaatt |
171 |
Q |
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| T |
34860514 |
ccactctttgaagtctgctttttcagagaagtggtaaaaagatttgttgtatttgagtagggagatcaatt |
34860584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 34860600 - 34860639
Alignment:
| Q |
195 |
tcaacttacacatataagcttcatcatgtatttccctgca |
234 |
Q |
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| T |
34860600 |
tcaacttacacatataagcttcatcatgtatttccctgca |
34860639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 2242594 - 2242506
Alignment:
| Q |
85 |
agaaaaattccaaataccactctttgaagt--ctgctttttcagagaagtggtaaaaagatttgttgtatttaagtagggagatcaatt |
171 |
Q |
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| T |
2242594 |
agaaaacttgcacataccactctttgaattatctgctttgttagagaagtggtcaaaagattagttgtatttgagtaaggagatcaatt |
2242506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 5757387 - 5757427
Alignment:
| Q |
126 |
gagaagtggtaaaa-agatttgttgtatttaagtagggaga |
165 |
Q |
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| T |
5757387 |
gagaagtggtaaaaaagatttgttgtatttgagtagggaga |
5757427 |
T |
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